PeerJ

0.6(top 50%)

2-year impact

9(top 100%)

PR articles

37(top 100%)

PR citations

4(top 100%)

PR h-index

4(top 100%)

h-index

0.6(top 50%)

2-YI (no self-cite.)

20.7K

documents

313.1K

doc citations

Top Articles

#	Title	Journal	Citations
1	VSEARCH: a versatile open source tool for metagenomics	PeerJ	7,834
2	scikit-image: image processing in Python	PeerJ	4,154
3	MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies	PeerJ	2,551
4	Poppr : an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction	PeerJ	2,518
5	A brief introduction to mixed effects modelling and multi-model inference in ecology	PeerJ	1,499
6	MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities	PeerJ	1,330
7	Anvi’o: an advanced analysis and visualization platform for ‘omics data	PeerJ	1,235
8	Using observation-level random effects to model overdispersion in count data in ecology and evolution	PeerJ	867
9	VirSorter: mining viral signal from microbial genomic data	PeerJ	745
10	kuenm: an R package for detailed development of ecological niche models using Maxent	PeerJ	720
11	Random forest as a generic framework for predictive modeling of spatial and spatio-temporal variables	PeerJ	715
12	Swarm: robust and fast clustering method for amplicon-based studies	PeerJ	654
13	AMAS: a fast tool for alignment manipulation and computing of summary statistics	PeerJ	615
14	Compact graphical representation of phylogenetic data and metadata with GraPhlAn	PeerJ	613
15	The state of OA: a large-scale analysis of the prevalence and impact of Open Access articles	PeerJ	590
16	Factors affecting the composition of the gut microbiota, and its modulation	PeerJ	519
17	PhyloSift: phylogenetic analysis of genomes and metagenomes	PeerJ	424
18	Swarm v2: highly-scalable and high-resolution amplicon clustering	PeerJ	418
19	Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences	PeerJ	412
20	The impact of artificial intelligence in medicine on the future role of the physician	PeerJ	393
21	MaxEnt’s parameter configuration and small samples: are we paying attention to recommendations? A systematic review	PeerJ	386
22	dDocent : a RADseq, variant-calling pipeline designed for population genomics of non-model organisms	PeerJ	361
23	A comparison of observation-level random effect and Beta-Binomial models for modelling overdispersion in Binomial data in ecology & evolution	PeerJ	334
24	The timing mega-study: comparing a range of experiment generators, both lab-based and online	PeerJ	323
25	Adapterama I: universal stubs and primers for 384 unique dual-indexed or 147,456 combinatorially-indexed Illumina libraries (iTru & iNext)	PeerJ	302
26	Comparing multiple comparisons: practical guidance for choosing the best multiple comparisons test	PeerJ	299
27	Rhea: a transparent and modular R pipeline for microbial profiling based on 16S rRNA gene amplicons	PeerJ	299
28	Linking pangenomes and metagenomes: the Prochlorococcus metapangenome	PeerJ	287
29	The phylogenetic relationships of basal archosauromorphs, with an emphasis on the systematics of proterosuchian archosauriforms	PeerJ	284
30	Data reuse and the open data citation advantage	PeerJ	280
31	Leopard (Panthera pardus) status, distribution, and the research efforts across its range	PeerJ	275
32	Identification of exosome-like nanoparticle-derived microRNAs from 11 edible fruits and vegetables	PeerJ	264
33	Real-time bioacoustics monitoring and automated species identification	PeerJ	252
34	Phage on tap–a quick and efficient protocol for the preparation of bacteriophage laboratory stocks	PeerJ	248
35	Green synthesis of silver nanoparticles in aloe vera plant extract prepared by a hydrothermal method and their synergistic antibacterial activity	PeerJ	244
36	Computational bioacoustics with deep learning: a review and roadmap	PeerJ	239
37	Denoising the Denoisers: an independent evaluation of microbiome sequence error-correction approaches	PeerJ	238
38	Spider phylogenomics: untangling the Spider Tree of Life	PeerJ	226
39	Breast cancer detection using deep convolutional neural networks and support vector machines	PeerJ	226
40	Regenerative agriculture: merging farming and natural resource conservation profitably	PeerJ	226
41	Accuracy of taxonomy prediction for 16S rRNA and fungal ITS sequences	PeerJ	225
42	Why choose Random Forest to predict rare species distribution with few samples in large undersampled areas? Three Asian crane species models provide supporting evidence	PeerJ	223
43	Continent-wide survey reveals massive decline in African savannah elephants	PeerJ	221
44	Applications and limitations of current markerless motion capture methods for clinical gait biomechanics	PeerJ	221
45	iSNO-AAPair: incorporating amino acid pairwise coupling into PseAAC for predicting cysteineS-nitrosylation sites in proteins	PeerJ	220
46	Validation of COI metabarcoding primers for terrestrial arthropods	PeerJ	220
47	Characterisation of the human uterine microbiome in non-pregnant women through deep sequencing of the V1-2 region of the 16S rRNA gene	PeerJ	219
48	Depression, anxiety and their comorbidity in the Swedish general population: point prevalence and the effect on health-related quality of life	PeerJ	215
49	Transfection types, methods and strategies: a technical review	PeerJ	214
50	Non-biological synthetic spike-in controls and the AMPtk software pipeline improve mycobiome data	PeerJ	209

What are top articles?

This list shows the peer-reviewed articles associated with PeerJ ranked by citation count in the indexed corpus. These counts may include citations from non-peer-reviewed documents and therefore differ from the peer-reviewed citation metrics used elsewhere on this profile.

Scientometrics

Overviews

Citing Bodies

Medicine, Biology

Top Articles