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Top Articles

#TitleJournalYearCitations
1A general and simple method for obtaining R2 from generalized linear mixed‐effects modelsMethods in Ecology and Evolution20137,490
2phytools: an R package for phylogenetic comparative biology (and other things)Methods in Ecology and Evolution20127,280
3A protocol for data exploration to avoid common statistical problemsMethods in Ecology and Evolution20105,735
4popart: full‐feature software for haplotype network constructionMethods in Ecology and Evolution20154,199
5ggtree: an r package for visualization and annotation of phylogenetic trees with their covariates and other associated dataMethods in Ecology and Evolution20172,998
6piecewiseSEM: Piecewise structural equation modelling inr for ecology, evolution, and systematicsMethods in Ecology and Evolution20162,488
7iNEXT: an R package for rarefaction and extrapolation of species diversity (Hill numbers)Methods in Ecology and Evolution20162,368
8Simple means to improve the interpretability of regression coefficientsMethods in Ecology and Evolution20102,158
9The art of modelling range-shifting speciesMethods in Ecology and Evolution20101,945
10BORIS: a free, versatile open‐source event‐logging software for video/audio coding and live observationsMethods in Ecology and Evolution20161,798
11Selecting pseudo‐absences for species distribution models: how, where and how many?Methods in Ecology and Evolution20121,658
12geomorph: anrpackage for the collection and analysis of geometric morphometric shape dataMethods in Ecology and Evolution20131,631
13betapart: an R package for the study of beta diversityMethods in Ecology and Evolution20121,561
14ENMeval: An R package for conducting spatially independent evaluations and estimating optimal model complexity for Maxent ecological niche modelsMethods in Ecology and Evolution20141,277
15smatr 3– an R package for estimation and inference about allometric linesMethods in Ecology and Evolution20121,244
16SIMR: an R package for power analysis of generalized linear mixed models by simulationMethods in Ecology and Evolution20161,229
17mvabund– an R package for model‐based analysis of multivariate abundance dataMethods in Ecology and Evolution20121,166
18rptR: repeatability estimation and variance decomposition by generalized linear mixed‐effects modelsMethods in Ecology and Evolution20171,117
19The use of focus group discussion methodology: Insights from two decades of application in conservationMethods in Ecology and Evolution20181,056
20diveRsity: An R package for the estimation and exploration of population genetics parameters and their associated errorsMethods in Ecology and Evolution20131,051
21LEA: An R package for landscape and ecological association studiesMethods in Ecology and Evolution20151,047
22Do not log‐transform count dataMethods in Ecology and Evolution2010942
23Distance‐based multivariate analyses confound location and dispersion effectsMethods in Ecology and Evolution2012905
24Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing dataMethods in Ecology and Evolution2013868
25SDMtoolbox: a python‐based GIS toolkit for landscape genetic, biogeographic and species distribution model analysesMethods in Ecology and Evolution2014864
26Extension of Nakagawa & Schielzeth's R2GLMM to random slopes modelsMethods in Ecology and Evolution2014769
27Diversitree: comparative phylogenetic analyses of diversification in RMethods in Ecology and Evolution2012767
28How to measure and test phylogenetic signalMethods in Ecology and Evolution2012759
29BAMMtools: an R package for the analysis of evolutionary dynamics on phylogenetic treesMethods in Ecology and Evolution2014751
30Phylogenetic signal and linear regression on species dataMethods in Ecology and Evolution2010721
31Critical considerations for the application of environmental DNA methods to detect aquatic speciesMethods in Ecology and Evolution2016684
32Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene dataMethods in Ecology and Evolution2013652
33abc: an R package for approximate Bayesian computation (ABC)Methods in Ecology and Evolution2012617
34CliMond: global high‐resolution historical and future scenario climate surfaces for bioclimatic modellingMethods in Ecology and Evolution2012565
35Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoringMethods in Ecology and Evolution2012543
36Presence‐only modelling using MAXENT: when can we trust the inferences?Methods in Ecology and Evolution2013537
37Investigating the relationship between biodiversity and ecosystem multifunctionality: challenges and solutionsMethods in Ecology and Evolution2014533
38Robustness of linear mixed‐effects models to violations of distributional assumptionsMethods in Ecology and Evolution2020528
39PASSaGE: Pattern Analysis, Spatial Statistics and Geographic Exegesis. Version 2Methods in Ecology and Evolution2011525
40A protocol for conducting and presenting results of regression‐type analysesMethods in Ecology and Evolution2016522
41Guidelines for estimating repeatabilityMethods in Ecology and Evolution2012521
42Using false discovery rates for multiple comparisons in ecology and evolutionMethods in Ecology and Evolution2011483
43Understanding co‐occurrence by modelling species simultaneously with a Joint Species Distribution Model (JSDM)Methods in Ecology and Evolution2014477
44CoordinateCleaner: Standardized cleaning of occurrence records from biological collection databasesMethods in Ecology and Evolution2019473
45Lost in parameter space: a road map for stacksMethods in Ecology and Evolution2017466
46Testing the significance of canonical axes in redundancy analysisMethods in Ecology and Evolution2011459
47Nondestructive estimates of above‐ground biomass using terrestrial laser scanningMethods in Ecology and Evolution2015449
48How to fit nonlinear plant growth models and calculate growth rates: an update for ecologistsMethods in Ecology and Evolution2012446
49PopGenReport: simplifying basic population genetic analyses in RMethods in Ecology and Evolution2014441
50Assessing transferability of ecological models: an underappreciated aspect of statistical validationMethods in Ecology and Evolution2012439