| 1 | A general and simple method for obtaining R2 from generalized linear mixed‐effects models | Methods in Ecology and Evolution | 2013 | 7,522 |
| 2 | phytools: an R package for phylogenetic comparative biology (and other things) | Methods in Ecology and Evolution | 2012 | 6,585 |
| 3 | A protocol for data exploration to avoid common statistical problems | Methods in Ecology and Evolution | 2010 | 5,836 |
| 4 | popart: full‐feature software for haplotype network construction | Methods in Ecology and Evolution | 2015 | 4,304 |
| 5 | ggtree: an r package for visualization and annotation of phylogenetic trees with their covariates and other associated data | Methods in Ecology and Evolution | 2017 | 2,773 |
| 6 | piecewiseSEM: Piecewise structural equation modelling inr for ecology, evolution, and systematics | Methods in Ecology and Evolution | 2016 | 2,755 |
| 7 | iNEXT: an R package for rarefaction and extrapolation of species diversity (Hill numbers) | Methods in Ecology and Evolution | 2016 | 2,536 |
| 8 | Simple means to improve the interpretability of regression coefficients | Methods in Ecology and Evolution | 2010 | 2,106 |
| 9 | The art of modelling range-shifting species | Methods in Ecology and Evolution | 2010 | 1,992 |
| 10 | BORIS: a free, versatile open‐source event‐logging software for video/audio coding and live observations | Methods in Ecology and Evolution | 2016 | 1,900 |
| 11 | Selecting pseudo‐absences for species distribution models: how, where and how many? | Methods in Ecology and Evolution | 2012 | 1,778 |
| 12 | betapart: an R package for the study of beta diversity | Methods in Ecology and Evolution | 2012 | 1,595 |
| 13 | geomorph: anrpackage for the collection and analysis of geometric morphometric shape data | Methods in Ecology and Evolution | 2013 | 1,572 |
| 14 | SIMR: an R package for power analysis of generalized linear mixed models by simulation | Methods in Ecology and Evolution | 2016 | 1,370 |
| 15 | ENMeval: An R package for conducting spatially independent evaluations and estimating optimal model complexity for Maxent ecological niche models | Methods in Ecology and Evolution | 2014 | 1,357 |
| 16 | The use of focus group discussion methodology: Insights from two decades of application in conservation | Methods in Ecology and Evolution | 2018 | 1,309 |
| 17 | smatr 3– an R package for estimation and inference about allometric lines | Methods in Ecology and Evolution | 2012 | 1,213 |
| 18 | mvabund– an R package for model‐based analysis of multivariate abundance data | Methods in Ecology and Evolution | 2012 | 1,127 |
| 19 | rptR: repeatability estimation and variance decomposition by generalized linear mixed‐effects models | Methods in Ecology and Evolution | 2017 | 1,098 |
| 20 | diveRsity: An R package for the estimation and exploration of population genetics parameters and their associated errors | Methods in Ecology and Evolution | 2013 | 1,015 |
| 21 | Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data | Methods in Ecology and Evolution | 2013 | 962 |
| 22 | SDMtoolbox: a python‐based GIS toolkit for landscape genetic, biogeographic and species distribution model analyses | Methods in Ecology and Evolution | 2014 | 891 |
| 23 | Do not log‐transform count data | Methods in Ecology and Evolution | 2010 | 889 |
| 24 | LEA: An R package for landscape and ecological association studies | Methods in Ecology and Evolution | 2015 | 885 |
| 25 | Distance‐based multivariate analyses confound location and dispersion effects | Methods in Ecology and Evolution | 2012 | 882 |
| 26 | Extension of Nakagawa & Schielzeth's R2GLMM to random slopes models | Methods in Ecology and Evolution | 2014 | 756 |
| 27 | How to measure and test phylogenetic signal | Methods in Ecology and Evolution | 2012 | 732 |
| 28 | Robustness of linear mixed‐effects models to violations of distributional assumptions | Methods in Ecology and Evolution | 2020 | 699 |
| 29 | Phylogenetic signal and linear regression on species data | Methods in Ecology and Evolution | 2010 | 681 |
| 30 | Diversitree: comparative phylogenetic analyses of diversification in R | Methods in Ecology and Evolution | 2012 | 677 |
| 31 | BAMMtools: an R package for the analysis of evolutionary dynamics on phylogenetic trees | Methods in Ecology and Evolution | 2014 | 675 |
| 32 | Critical considerations for the application of environmental DNA methods to detect aquatic species | Methods in Ecology and Evolution | 2016 | 639 |
| 33 | Investigating the relationship between biodiversity and ecosystem multifunctionality: challenges and solutions | Methods in Ecology and Evolution | 2014 | 583 |
| 34 | CliMond: global high‐resolution historical and future scenario climate surfaces for bioclimatic modelling | Methods in Ecology and Evolution | 2012 | 569 |
| 35 | Presence‐only modelling using MAXENT: when can we trust the inferences? | Methods in Ecology and Evolution | 2013 | 547 |
| 36 | Generalizing hierarchical and variation partitioning in multiple regression and canonical analyses using the rdacca.hp R package | Methods in Ecology and Evolution | 2022 | 541 |
| 37 | A protocol for conducting and presenting results of regression‐type analyses | Methods in Ecology and Evolution | 2016 | 539 |
| 38 | CoordinateCleaner: Standardized cleaning of occurrence records from biological collection databases | Methods in Ecology and Evolution | 2019 | 529 |
| 39 | Guidelines for estimating repeatability | Methods in Ecology and Evolution | 2012 | 528 |
| 40 | PASSaGE: Pattern Analysis, Spatial Statistics and Geographic Exegesis. Version 2 | Methods in Ecology and Evolution | 2011 | 512 |
| 41 | abc: an R package for approximate Bayesian computation (ABC) | Methods in Ecology and Evolution | 2012 | 498 |
| 42 | raxmlGUI 2.0: A graphical interface and toolkit for phylogenetic analyses using RAxML | Methods in Ecology and Evolution | 2021 | 491 |
| 43 | pavo: an R package for the analysis, visualization and organization of spectral data | Methods in Ecology and Evolution | 2013 | 487 |
| 44 | Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data | Methods in Ecology and Evolution | 2013 | 483 |
| 45 | Nondestructive estimates of above‐ground biomass using terrestrial laser scanning | Methods in Ecology and Evolution | 2015 | 482 |
| 46 | Using false discovery rates for multiple comparisons in ecology and evolution | Methods in Ecology and Evolution | 2011 | 481 |
| 47 | Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring | Methods in Ecology and Evolution | 2012 | 479 |
| 48 | Understanding co‐occurrence by modelling species simultaneously with a Joint Species Distribution Model (JSDM) | Methods in Ecology and Evolution | 2014 | 468 |
| 49 | PopGenReport: simplifying basic population genetic analyses in R | Methods in Ecology and Evolution | 2014 | 446 |
| 50 | metan: An R package for multi‐environment trial analysis | Methods in Ecology and Evolution | 2020 | 445 |