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| 2 | Genome Biology | 4 | 14.3K | 52 | 4 |
| 3 | Cell Host and Microbe | 14 | 8.6K | 7 | 3 |
| 4 | Nature | 9 | 7.4K | 1262 | 1747 |
| 5 | PLoS Computational Biology | 16 | 5.9K | 16 | 14 |
| 6 | Nature Methods | 4 | 5.7K | 330 | 185 |
| 7 | Cell | 8 | 4.4K | 536 | 963 |
| 8 | Genome Biology | 9 | 4.1K | 17 | 43 |
| 9 | Nature Microbiology | 9 | 4.0K | 9 | 9 |
| 10 | Nature Communications | 8 | 3.5K | 2741 | 356 |
| 11 | Genome Medicine | 10 | 3.4K | 6 | 1 |
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| 13 | Gut | 5 | 2.5K | 555 | 97 |
| 14 | Proceedings of the National Academy of Sciences of the United States of America | 4 | 1.7K | 10144 | 3298 |
| 15 | Nature Medicine | 6 | 1.6K | 227 | 1442 |
| 16 | Immunity | 3 | 1.6K | 1030 | 747 |
| 17 | Bioinformatics | 13 | 1.2K | 133 | 674 |
| 18 | Microbiome | 5 | 1.2K | 48 | 90 |
| 19 | PLoS ONE | 6 | 1.0K | 12298 | 1431 |
| 20 | Science Translational Medicine | 3 | 1.0K | 692 | 429 |
| 21 | MSystems | 5 | 1.0K | 81 | 27 |
| 22 | JAMA Oncology | 2 | 904 | 773 | 708 |
| 23 | ISME Journal | 4 | 677 | 524 | 621 |
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| 48 | JCI Insight | 2 | 133 | 1145 | 1988 |
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| 60 | American Journal of Respiratory Cell and Molecular Biology | 1 | 54 | 1805 | 2690 |
| 62 | Mucosal Immunology | 1 | 52 | 467 | 966 |
| 63 | American Journal of Epidemiology | 1 | 39 | 3167 | 5247 |
| 63 | Trials | 1 | 39 | 5164 | 3832 |
| 65 | Journal of Molecular Biology | 1 | 33 | 6464 | 12426 |
| 65 | Diabetes | 1 | 33 | 4944 | 9883 |
| 65 | Journal of Pathology | 1 | 33 | 1658 | 4813 |
| 68 | FEMS Microbiology Reviews | 1 | 30 | 325 | 1915 |
| 69 | BMC Microbiology | 1 | 29 | 1441 | 4648 |
| 70 | Cellular Microbiology | 1 | 27 | 1128 | 3121 |
| 70 | International Journal of Women's Dermatology | 1 | 27 | 129 | 114 |
| 72 | Respiratory Research | 1 | 26 | 1518 | 3669 |
| 73 | Applied and Environmental Microbiology | 2 | 24 | 4313 | 16088 |
| 74 | BMC Cancer | 1 | 22 | 6115 | 15351 |
| 75 | Journal of Clinical Endocrinology and Metabolism | 1 | 21 | 8864 | 16403 |
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