Department of Marine Biology and Ecology

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#	Title	Journal	Year	Citations
1	The genomic landscape of rapid repeated evolutionary adaptation to toxic pollution in wild fish	Science	2016	348
2	Investigating the causes and consequences of symbiont shuffling in a multi-partner reef coral symbiosis under environmental change	Proceedings of the Royal Society B: Biological Sciences	2015	187
3	Considerations for maximizing the adaptive potential of restored coral populations in the western Atlantic	Ecological Applications	2019	163
4	The effects of weathering and chemical dispersion on Deepwater Horizon crude oil toxicity to mahi-mahi (Coryphaena hippurus) early life stages	Science of the Total Environment	2016	159
5	Geographic differences in vertical connectivity in the Caribbean coral Montastraea cavernosa despite high levels of horizontal connectivity at shallow depths	Molecular Ecology	2014	131
6	Ecological solutions to reef degradation: optimizing coral reef restoration in the Caribbean and Western Atlantic	PeerJ	2016	126
7	Time- and Oil-Dependent Transcriptomic and Physiological Responses to Deepwater Horizon Oil in Mahi-Mahi (Coryphaena hippurus) Embryos and Larvae	Environmental Science & Technology	2016	123
8	Bioerosion and Coral Reef Growth: A Dynamic Balance		2015	115
9	Tenacious D: Symbiodinium in clade D remain in reef corals at both high and low temperature extremes despite impairment	Journal of Experimental Biology	2017	112
10	Comparative analysis of the Pocillopora damicornis genome highlights role of immune system in coral evolution	Scientific Reports	2018	112
11	Growth tradeoffs associated with thermotolerant symbionts in the coral Pocillopora damicornis are lost in warmer oceans	Coral Reefs	2015	111
12	Corresponding morphological and molecular indicators of crude oil toxicity to the developing hearts of mahi mahi	Scientific Reports	2015	93
13	Designing a blueprint for coral reef survival	Biological Conservation	2021	82
14	Controls on surface water carbonate chemistry along North American ocean margins	Nature Communications	2020	77
15	Dynamic regulation of partner abundance mediates response of reef coral symbioses to environmental change	Ecology	2015	69
16	Gene expression biomarkers of heat stress in scleractinian corals: Promises and limitations	Comparative Biochemistry and Physiology Part - C: Toxicology and Pharmacology	2017	68
17	Effects of Deepwater Horizon crude oil exposure, temperature and developmental stage on oxygen consumption of embryonic and larval mahi-mahi (Coryphaena hippurus)	Aquatic Toxicology	2016	67
18	Dynamic symbioses reveal pathways to coral survival through prolonged heatwaves	Nature Communications	2020	67
19	Symbiont shuffling linked to differential photochemical dynamics of Symbiodinium in three Caribbean reef corals	Coral Reefs	2018	62
20	Coral reef recovery in the Galápagos Islands: the northernmost islands (Darwin and Wenman)	Coral Reefs	2015	57
21	Management strategy evaluation using the individual-based, multispecies modeling approach OSMOSE	Ecological Modelling	2016	56
22	Contrasting patterns of connectivity among endemic and widespread fire coral species (Millepora spp.) in the tropical Southwestern Atlantic	Coral Reefs	2017	53
23	Multiple linear regression models for predicting chronic aluminum toxicity to freshwater aquatic organisms and developing water quality guidelines	Environmental Toxicology and Chemistry	2018	53
24	Blooms of Karenia brevis (Davis) G. Hansen & Ø. Moestrup on the West Florida Shelf: Nutrient sources and potential management strategies based on a multi-year regional study	Harmful Algae	2014	51
25	Ontogenetic spatial distributions of red grouper (Epinephelus morio) and gag grouper (Mycteroperca microlepis) in the U.S. Gulf of Mexico	Fisheries Research	2017	51
26	Extensive coral mortality and critical habitat loss following dredging and their association with remotely-sensed sediment plumes	Marine Pollution Bulletin	2019	51
27	Evaluation of the impacts of different treatments of spatio-temporal variation in catch-per-unit-effort standardization models	Fisheries Research	2019	50
28	Recommendations on the Use of Ecosystem Modeling for Informing Ecosystem‐Based Fisheries Management and Restoration Outcomes in the Gulf of Mexico	Marine and Coastal Fisheries	2017	46
29	Physiological impacts of Deepwater Horizon oil on fish	Comparative Biochemistry and Physiology Part - C: Toxicology and Pharmacology	2019	46
30	Genomic patterns in Acropora cervicornis show extensive population structure and variable genetic diversity	Ecology and Evolution	2017	45
31	Molecular tools for coral reef restoration: Beyond biomarker discovery	Conservation Letters	2020	44
32	Host genotype and stable differences in algal symbiont communities explain patterns of thermal stress response of Montipora capitata following thermal pre-exposure and across multiple bleaching events	Coral Reefs	2021	44
33	The Landscape of Extreme Genomic Variation in the Highly Adaptable Atlantic Killifish	Genome Biology and Evolution	2017	43
34	Producing distribution maps for informing ecosystem-based fisheries management using a comprehensive survey database and spatio-temporal models	ICES Journal of Marine Science	2018	41
35	Assisting Ecosystem‐Based Fisheries Management Efforts Using a Comprehensive Survey Database, a Large Environmental Database, and Generalized Additive Models	Marine and Coastal Fisheries	2018	40
36	Thermotolerant coral symbionts modulate heat stress‐responsive genes in their hosts	Molecular Ecology	2020	39
37	Census of heat tolerance among Florida's threatened staghorn corals finds resilient individuals throughout existing nursery populations	Proceedings of the Royal Society B: Biological Sciences	2021	39
38	Chlorophyll fluorescence – A tool to assess photosynthetic performance and stress photophysiology in symbiotic marine invertebrates and seaplants	Marine Pollution Bulletin	2021	38
39	Occupation Dynamics and Impacts of Damselfish Territoriality on Recovering Populations of the Threatened Staghorn Coral, Acropora cervicornis	PLoS ONE	2015	38
40	An AOP analysis of selective serotonin reuptake inhibitors (SSRIs) for fish	Comparative Biochemistry and Physiology Part - C: Toxicology and Pharmacology	2017	37
41	The influence of diel carbonate chemistry fluctuations on the calcification rate of Acropora cervicornis under present day and future acidification conditions	Journal of Experimental Marine Biology and Ecology	2018	37
42	Lessons learned from SARS-CoV-2 measurements in wastewater	Science of the Total Environment	2021	36
43	Ecosystem modeling in the Gulf of Mexico: current status and future needs to address ecosystem-based fisheries management and restoration activities	Reviews in Fish Biology and Fisheries	2017	35
44	Exposure to ultraviolet radiation late in development increases the toxicity of oil to mahi‐mahi (Coryphaena hippurus) embryos	Environmental Toxicology and Chemistry	2017	35
45	Aging in Sensory and Motor Neurons Results in Learning Failure in Aplysia californica	PLoS ONE	2015	34
46	Combined effects of elevated temperature and Deepwater Horizon oil exposure on the cardiac performance of larval mahi-mahi, Coryphaena hippurus	PLoS ONE	2018	33
47	Assessing the Diversity and Distribution of Apicomplexans in Host and Free-Living Environments Using High-Throughput Amplicon Data and a Phylogenetically Informed Reference Framework	Frontiers in Microbiology	2019	33
48	Genotype by environment interactions in coral bleaching	Proceedings of the Royal Society B: Biological Sciences	2021	33
49	Novel transcriptome assembly and comparative toxicity pathway analysis in mahi-mahi (Coryphaena hippurus) embryos and larvae exposed to Deepwater Horizon oil	Scientific Reports	2017	31
50	State of corals and coral reefs of the Galápagos Islands (Ecuador): Past, present and future	Marine Pollution Bulletin	2018	31

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