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#TitleJournalYearCitations
1Urea denaturation by stronger dispersion interactions with proteins than water implies a 2-stage unfoldingProceedings of the National Academy of Sciences of the United States of America2008470
2Monomer adds to preformed structured oligomers of Abeta-peptides by a two-stage dock-lock mechanismProceedings of the National Academy of Sciences of the United States of America2007344
3Interactions between Hydrophobic and Ionic Solutes in Aqueous Guanidinium Chloride and Urea Solutions:  Lessons for Protein Denaturation MechanismJournal of the American Chemical Society2007324
4Role of Water in Protein Aggregation and Amyloid PolymorphismAccounts of Chemical Research2012301
5RNA and Protein Folding: Common Themes and Variations†Biochemistry2005252
6Toward a Molecular Theory of Early and Late Events in Monomer to Amyloid Fibril FormationAnnual Review of Physical Chemistry2011249
7Low-frequency normal modes that describe allosteric transitions in biological nanomachines are robust to sequence variationsProceedings of the National Academy of Sciences of the United States of America2006248
8Capturing the essence of folding and functions of biomolecules using coarse-grained modelsNature Communications2011222
9Mechanical unfolding of RNA hairpinsProceedings of the National Academy of Sciences of the United States of America2005215
10Pathways and Kinetic Barriers in Mechanical Unfolding and Refolding of RNA and ProteinsStructure2006201
11Theoretical Perspectives on Protein FoldingAnnual Review of Biophysics2010183
12Effects of denaturants and osmolytes on proteins are accurately predicted by the molecular transfer modelProceedings of the National Academy of Sciences of the United States of America2008182
13Influence of Preformed Asp23−Lys28 Salt Bridge on the Conformational Fluctuations of Monomers and Dimers of Aβ Peptides with Implications for Rates of Fibril FormationJournal of Physical Chemistry B2009147
14Revealing the bifurcation in the unfolding pathways of GFP by using single-molecule experiments and simulationsProceedings of the National Academy of Sciences of the United States of America2007145
15Interphase human chromosome exhibits out of equilibrium glassy dynamicsNature Communications2018127
16Collapse transition in proteinsPhysical Chemistry Chemical Physics2009125
17Size, shape, and flexibility of RNA structuresJournal of Chemical Physics2006117
18Dynamics of locking of peptides onto growing amyloid fibrilsProceedings of the National Academy of Sciences of the United States of America2009116
19Automated Manipulation of Biological Cells Using Gripper Formations Controlled By Optical TweezersIEEE Transactions on Automation Science and Engineering2014114
20Allosteric Transitions in the Chaperonin GroEL are Captured by a Dominant Normal Mode that is Most Robust to Sequence VariationsBiophysical Journal2007111
21Kinetics of Loop Formation in Polymer ChainsJournal of Physical Chemistry B2008108
22Protein folding guides disulfide bond formationProceedings of the National Academy of Sciences of the United States of America2015105
23Rapid image deconvolution and multiview fusion for optical microscopyNature Biotechnology2020105
24Factors Governing Fibrillogenesis of Polypeptide Chains Revealed by Lattice ModelsPhysical Review Letters2010104
25Assembly mechanisms of RNA pseudoknots are determined by the stabilities of constituent secondary structuresProceedings of the National Academy of Sciences of the United States of America2009100
26Three-dimensional residual channel attention networks denoise and sharpen fluorescence microscopy image volumesNature Methods202194
27AWSEM-IDP: A Coarse-Grained Force Field for Intrinsically Disordered ProteinsJournal of Physical Chemistry B201890
28How accurate are polymer models in the analysis of Förster resonance energy transfer experiments on proteins?Journal of Chemical Physics200989
29Thermodynamic Perspective on the Dock−Lock Growth Mechanism of Amyloid FibrilsJournal of Physical Chemistry B200988
30Metal Ion Dependence of Cooperative Collapse Transitions in RNAJournal of Molecular Biology200986
31Nanopore–Protein Interactions Dramatically Alter Stability and Yield of the Native State in Restricted SpacesJournal of Molecular Biology200685
32Collapse kinetics and chevron plots from simulations of denaturant-dependent folding of globular proteinsProceedings of the National Academy of Sciences of the United States of America201185
33Effects of pH on Proteins: Predictions for Ensemble and Single-Molecule Pulling ExperimentsJournal of the American Chemical Society201285
34Determination of network of residues that regulate allostery in protein families using sequence analysisProtein Science200684
35Mechanical Unfolding of RNA: From Hairpins to Structures with Internal MultiloopsBiophysical Journal200783
36Dry amyloid fibril assembly in a yeast prion peptide is mediated by long-lived structures containing water wiresProceedings of the National Academy of Sciences of the United States of America201082
37Symmetry, Rigidity, and Allosteric Signaling: From Monomeric Proteins to Molecular MachinesChemical Reviews201982
38Persistence Length Changes Dramatically as RNA FoldsPhysical Review Letters200581
39Effects of Trimethylamine N-Oxide (TMAO) and Crowding Agents on the Stability of RNA HairpinsJournal of the American Chemical Society200881
40Allostery Wiring Diagrams in the Transitions that Drive the GroEL Reaction CycleJournal of Molecular Biology200977
41Force-dependent hopping rates of RNA hairpins can be estimated from accurate measurement of the folding landscapesProceedings of the National Academy of Sciences of the United States of America200874
42Dissecting the Kinematics of the Kinesin StepStructure201273
43Denaturant-dependent folding of GFPProceedings of the National Academy of Sciences of the United States of America201271
44Chain organization of human interphase chromosome determines the spatiotemporal dynamics of chromatin lociPLoS Computational Biology201871
45Allosteric Communication in Dihydrofolate Reductase: Signaling Network and Pathways for Closed to Occluded Transition and BackJournal of Molecular Biology200769
46RNA Tertiary Interactions Mediate Native Collapse of a Bacterial Group I RibozymeJournal of Molecular Biology200566
47Semiflexible chains in confined spacesPhysical Review E200962
48Promoter melting triggered by bacterial RNA polymerase occurs in three stepsProceedings of the National Academy of Sciences of the United States of America201061
49Extracting Stacking Interaction Parameters for RNA from the Data Set of Native StructuresJournal of Molecular Biology200560
50Rigor to Post-Rigor Transition in Myosin V: Link between the Dynamics and the Supporting ArchitectureStructure201060