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Biophysics Program
167
(top 1%)
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8.3K
(top 1%)
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51
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9.4K
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983
citing journals
Top Articles
#
Title
Journal
Year
Citations
1
Urea denaturation by stronger dispersion interactions with proteins than water implies a 2-stage unfolding
Proceedings of the National Academy of Sciences of the United States of America
2008
470
2
Monomer adds to preformed structured oligomers of Abeta-peptides by a two-stage dock-lock mechanism
Proceedings of the National Academy of Sciences of the United States of America
2007
344
3
Interactions between Hydrophobic and Ionic Solutes in Aqueous Guanidinium Chloride and Urea Solutions: Lessons for Protein Denaturation Mechanism
Journal of the American Chemical Society
2007
324
4
Role of Water in Protein Aggregation and Amyloid Polymorphism
Accounts of Chemical Research
2012
301
5
RNA and Protein Folding: Common Themes and Variations†
Biochemistry
2005
252
6
Toward a Molecular Theory of Early and Late Events in Monomer to Amyloid Fibril Formation
Annual Review of Physical Chemistry
2011
249
7
Low-frequency normal modes that describe allosteric transitions in biological nanomachines are robust to sequence variations
Proceedings of the National Academy of Sciences of the United States of America
2006
248
8
Capturing the essence of folding and functions of biomolecules using coarse-grained models
Nature Communications
2011
222
9
Mechanical unfolding of RNA hairpins
Proceedings of the National Academy of Sciences of the United States of America
2005
215
10
Pathways and Kinetic Barriers in Mechanical Unfolding and Refolding of RNA and Proteins
Structure
2006
201
11
Theoretical Perspectives on Protein Folding
Annual Review of Biophysics
2010
183
12
Effects of denaturants and osmolytes on proteins are accurately predicted by the molecular transfer model
Proceedings of the National Academy of Sciences of the United States of America
2008
182
13
Influence of Preformed Asp23−Lys28 Salt Bridge on the Conformational Fluctuations of Monomers and Dimers of Aβ Peptides with Implications for Rates of Fibril Formation
Journal of Physical Chemistry B
2009
147
14
Revealing the bifurcation in the unfolding pathways of GFP by using single-molecule experiments and simulations
Proceedings of the National Academy of Sciences of the United States of America
2007
145
15
Interphase human chromosome exhibits out of equilibrium glassy dynamics
Nature Communications
2018
127
16
Collapse transition in proteins
Physical Chemistry Chemical Physics
2009
125
17
Size, shape, and flexibility of RNA structures
Journal of Chemical Physics
2006
117
18
Dynamics of locking of peptides onto growing amyloid fibrils
Proceedings of the National Academy of Sciences of the United States of America
2009
116
19
Automated Manipulation of Biological Cells Using Gripper Formations Controlled By Optical Tweezers
IEEE Transactions on Automation Science and Engineering
2014
114
20
Allosteric Transitions in the Chaperonin GroEL are Captured by a Dominant Normal Mode that is Most Robust to Sequence Variations
Biophysical Journal
2007
111
21
Kinetics of Loop Formation in Polymer Chains
Journal of Physical Chemistry B
2008
108
22
Protein folding guides disulfide bond formation
Proceedings of the National Academy of Sciences of the United States of America
2015
105
23
Rapid image deconvolution and multiview fusion for optical microscopy
Nature Biotechnology
2020
105
24
Factors Governing Fibrillogenesis of Polypeptide Chains Revealed by Lattice Models
Physical Review Letters
2010
104
25
Assembly mechanisms of RNA pseudoknots are determined by the stabilities of constituent secondary structures
Proceedings of the National Academy of Sciences of the United States of America
2009
100
26
Three-dimensional residual channel attention networks denoise and sharpen fluorescence microscopy image volumes
Nature Methods
2021
94
27
AWSEM-IDP: A Coarse-Grained Force Field for Intrinsically Disordered Proteins
Journal of Physical Chemistry B
2018
90
28
How accurate are polymer models in the analysis of Förster resonance energy transfer experiments on proteins?
Journal of Chemical Physics
2009
89
29
Thermodynamic Perspective on the Dock−Lock Growth Mechanism of Amyloid Fibrils
Journal of Physical Chemistry B
2009
88
30
Metal Ion Dependence of Cooperative Collapse Transitions in RNA
Journal of Molecular Biology
2009
86
31
Nanopore–Protein Interactions Dramatically Alter Stability and Yield of the Native State in Restricted Spaces
Journal of Molecular Biology
2006
85
32
Collapse kinetics and chevron plots from simulations of denaturant-dependent folding of globular proteins
Proceedings of the National Academy of Sciences of the United States of America
2011
85
33
Effects of pH on Proteins: Predictions for Ensemble and Single-Molecule Pulling Experiments
Journal of the American Chemical Society
2012
85
34
Determination of network of residues that regulate allostery in protein families using sequence analysis
Protein Science
2006
84
35
Mechanical Unfolding of RNA: From Hairpins to Structures with Internal Multiloops
Biophysical Journal
2007
83
36
Dry amyloid fibril assembly in a yeast prion peptide is mediated by long-lived structures containing water wires
Proceedings of the National Academy of Sciences of the United States of America
2010
82
37
Symmetry, Rigidity, and Allosteric Signaling: From Monomeric Proteins to Molecular Machines
Chemical Reviews
2019
82
38
Persistence Length Changes Dramatically as RNA Folds
Physical Review Letters
2005
81
39
Effects of Trimethylamine
N
-Oxide (TMAO) and Crowding Agents on the Stability of RNA Hairpins
Journal of the American Chemical Society
2008
81
40
Allostery Wiring Diagrams in the Transitions that Drive the GroEL Reaction Cycle
Journal of Molecular Biology
2009
77
41
Force-dependent hopping rates of RNA hairpins can be estimated from accurate measurement of the folding landscapes
Proceedings of the National Academy of Sciences of the United States of America
2008
74
42
Dissecting the Kinematics of the Kinesin Step
Structure
2012
73
43
Denaturant-dependent folding of GFP
Proceedings of the National Academy of Sciences of the United States of America
2012
71
44
Chain organization of human interphase chromosome determines the spatiotemporal dynamics of chromatin loci
PLoS Computational Biology
2018
71
45
Allosteric Communication in Dihydrofolate Reductase: Signaling Network and Pathways for Closed to Occluded Transition and Back
Journal of Molecular Biology
2007
69
46
RNA Tertiary Interactions Mediate Native Collapse of a Bacterial Group I Ribozyme
Journal of Molecular Biology
2005
66
47
Semiflexible chains in confined spaces
Physical Review E
2009
62
48
Promoter melting triggered by bacterial RNA polymerase occurs in three steps
Proceedings of the National Academy of Sciences of the United States of America
2010
61
49
Extracting Stacking Interaction Parameters for RNA from the Data Set of Native Structures
Journal of Molecular Biology
2005
60
50
Rigor to Post-Rigor Transition in Myosin V: Link between the Dynamics and the Supporting Architecture
Structure
2010
60
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