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citing journals

Top Articles

#TitleJournalYearCitations
1Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2Nature Biotechnology201912,956
2Predictive functional profiling of microbial communities using 16S rRNA marker gene sequencesNature Biotechnology20138,414
3The Treatment-Naive Microbiome in New-Onset Crohn’s DiseaseCell Host and Microbe20142,700
4Engineering the third wave of biocatalysisNature20122,180
5Shewanella secretes flavins that mediate extracellular electron transferProceedings of the National Academy of Sciences of the United States of America20081,680
6Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label studyMicrobiome2017961
7Cohabiting family members share microbiota with one another and with their dogsELife2013834
8Enterotypes in the landscape of gut microbial community compositionNature Microbiology2018783
9Minimum Information about a Biosynthetic Gene clusterNature Chemical Biology2015743
10Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studiesNature Biotechnology2016663
11American Gut: an Open Platform for Citizen Science Microbiome ResearchMSystems2018632
12Standardized Frozen Preparation for Transplantation of Fecal Microbiota for Recurrent Clostridium difficile InfectionAmerican Journal of Gastroenterology2012600
13Ecology and Biotechnology of the GenusShewanellaAnnual Review of Microbiology2007567
14A CRISPR/Cas9 Toolbox for Multiplexed Plant Genome Editing and Transcriptional RegulationPlant Physiology2015560
15US Immigration Westernizes the Human Gut MicrobiomeCell2018553
16Adverse Outcome Pathway (AOP) Development I: Strategies and PrinciplesToxicological Sciences2014547
17EnvironmentalEscherichia coli: ecology and public health implications-a reviewJournal of Applied Microbiology2017539
18Persisters: a distinct physiological state of E. coliBMC Microbiology2006534
19Effect of Diet on the Gut Microbiota: Rethinking Intervention DurationNutrients2019506
20Vegetable-oil-based polymers as future polymeric biomaterialsActa Biomaterialia2014478
21Daily Sampling Reveals Personalized Diet-Microbiome Associations in HumansCell Host and Microbe2019476
22Microbial Biofilm Voltammetry: Direct Electrochemical Characterization of Catalytic Electrode-Attached BiofilmsApplied and Environmental Microbiology2008475
23Direct Reprogramming of Human Fibroblasts to Functional and Expandable HepatocytesCell Stem Cell2014472
24Presence and Growth of Naturalized Escherichia coli in Temperate Soils from Lake Superior WatershedsApplied and Environmental Microbiology2006451
25Hydrolase-catalyzed biotransformations in deep eutectic solventsChemical Communications2008447
26Experimental evolution of multicellularityProceedings of the National Academy of Sciences of the United States of America2012447
27Antibiotics, Pediatric Dysbiosis, and DiseaseCell Host and Microbe2015444
28The Mtr Respiratory Pathway Is Essential for Reducing Flavins and Electrodes in Shewanella oneidensisJournal of Bacteriology2010425
29Interaction of gut microbiota with bile acid metabolism and its influence on disease statesApplied Microbiology and Biotechnology2017423
30Transcription Activator-Like Effector Nucleases Enable Efficient Plant Genome Engineering    Plant Physiology2012422
31Escherichia coli in the Environment: Implications for Water Quality and Human HealthMicrobes and Environments2008405
32Understanding the mechanisms of faecal microbiota transplantationNature Reviews Gastroenterology and Hepatology2016400
33Nanobiocatalysis and its potential applicationsTrends in Biotechnology2008399
34Improving enzyme properties: when are closer mutations better?Trends in Biotechnology2005397
35Flavin Electron Shuttles Dominate Extracellular Electron Transfer by Shewanella oneidensisMBio2013389
36Captivity humanizes the primate microbiomeProceedings of the National Academy of Sciences of the United States of America2016388
37MIBiG 2.0: a repository for biosynthetic gene clusters of known functionNucleic Acids Research2020367
38Erosion reduces soil microbial diversity, network complexity and multifunctionalityISME Journal2021362
39Chemotherapy‐driven dysbiosis in the intestinal microbiomeAlimentary Pharmacology and Therapeutics2015361
40Stable Engraftment of Bifidobacterium longum AH1206 in the Human Gut Depends on Individualized Features of the Resident MicrobiomeCell Host and Microbe2016361
41Microbiota transplantation restores normal fecal bile acid composition in recurrentClostridium difficileinfectionAmerican Journal of Physiology - Renal Physiology2014353
42Rethinking “Enterotypes”Cell Host and Microbe2014331
43Complex host genetics influence the microbiome in inflammatory bowel diseaseGenome Medicine2014328
44Evaluating the Information Content of Shallow Shotgun MetagenomicsMSystems2018327
45Towards Electrosynthesis in Shewanella: Energetics of Reversing the Mtr Pathway for Reductive MetabolismPLoS ONE2011323
46Genetic and phenotypic intra-species variation in Candida albicansGenome Research2015319
47Shuttling happens: soluble flavin mediators of extracellular electron transfer in ShewanellaApplied Microbiology and Biotechnology2012316
48Strain Tracking Reveals the Determinants of Bacterial Engraftment in the Human Gut Following Fecal Microbiota TransplantationCell Host and Microbe2018312
49Overflow Metabolism in Escherichia coli during Steady-State Growth: Transcriptional Regulation and Effect of the Redox RatioApplied and Environmental Microbiology2006310
50Biodegradation of atrazine and related s -triazine compounds: from enzymes to field studiesApplied Microbiology and Biotechnology2002306