| # | Title | Journal | Year | Citations |
|---|
| 1 | SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing | Journal of Computational Biology | 2012 | 20,193 |
| 2 | Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation | Nature Biotechnology | 2010 | 13,805 |
| 3 | Robust uncertainty principles: exact signal reconstruction from highly incomplete frequency information | IEEE Transactions on Information Theory | 2006 | 11,987 |
| 4 | Fronts propagating with curvature-dependent speed: Algorithms based on Hamilton-Jacobi formulations | Journal of Computational Physics | 1988 | 11,578 |
| 5 | Decoding by Linear Programming | IEEE Transactions on Information Theory | 2005 | 5,199 |
| 6 | Near-Optimal Signal Recovery From Random Projections: Universal Encoding Strategies? | IEEE Transactions on Information Theory | 2006 | 5,193 |
| 7 | Variational Mode Decomposition | IEEE Transactions on Signal Processing | 2014 | 4,691 |
| 8 | A Level Set Approach for Computing Solutions to Incompressible Two-Phase Flow | Journal of Computational Physics | 1994 | 3,887 |
| 9 | Potential Games | Games and Economic Behavior | 1996 | 3,130 |
| 10 | ROCR: visualizing classifier performance in R | Bioinformatics | 2005 | 2,677 |
| 11 | Efficient implementation of essentially non-oscillatory shock-capturing schemes, II | Journal of Computational Physics | 1989 | 2,675 |
| 12 | Shape modeling with front propagation: a level set approach | IEEE Transactions on Pattern Analysis and Machine Intelligence | 1995 | 2,598 |
| 13 | A fast marching level set method for monotonically advancing fronts. | Proceedings of the National Academy of Sciences of the United States of America | 1996 | 2,462 |
| 14 | Inference and analysis of cell-cell communication using CellChat | Nature Communications | 2021 | 2,174 |
| 15 | A Multiphase Level Set Framework for Image Segmentation Using the Mumford and Shah Model | International Journal of Computer Vision | 2002 | 2,060 |
| 16 | Interacting Particle Systems | Grundlehren Der Mathematischen Wissenschaften in Einzeldarstellungen Mit Besonderer Berücksichtigung Der Anwendungsgebiete | 1985 | 1,993 |
| 17 | Nonlinear controllability and observability | IEEE Transactions on Automatic Control | 1977 | 1,832 |
| 18 | Completely positive linear maps on complex matrices | Linear Algebra and Its Applications | 1975 | 1,748 |
| 19 | Empirical Wavelet Transform | IEEE Transactions on Signal Processing | 2013 | 1,523 |
| 20 | Sliced Inverse Regression for Dimension Reduction | Journal of the American Statistical Association | 1991 | 1,465 |
| 21 | Disordered Microbial Communities in Asthmatic Airways | PLoS ONE | 2010 | 1,436 |
| 22 | Differential Topology | Graduate Texts in Mathematics | 1976 | 1,403 |
| 23 | A Coupled Level Set and Volume-of-Fluid Method for Computing 3D and Axisymmetric Incompressible Two-Phase Flows | Journal of Computational Physics | 2000 | 1,317 |
| 24 | Numerical study of slightly viscous flow | Journal of Fluid Mechanics | 1973 | 1,307 |
| 25 | Level-spacing distributions and the Airy kernel | Communications in Mathematical Physics | 1994 | 1,303 |
| 26 | Linearization by output injection and nonlinear observers | Systems and Control Letters | 1983 | 1,236 |
| 27 | Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products | Journal of Computational Biology | 2013 | 1,235 |
| 28 | Stochastic Theory of a Data-Handling System with Multiple Sources | Bell System Technical Journal | 1982 | 1,180 |
| 29 | Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory | BMC Bioinformatics | 2012 | 1,075 |
| 30 | A Fast Level Set Method for Propagating Interfaces | Journal of Computational Physics | 1995 | 1,062 |
| 31 | Theory of Operator Algebras II | Encyclopaedia of Mathematical Sciences | 2003 | 1,049 |
| 32 | Self-duality in four-dimensional Riemannian geometry | Proceedings of the Royal Society of London Series A, Mathematical and Physical Sciences | 1978 | 1,029 |
| 33 | Spectral grouping using the nystrom method | IEEE Transactions on Pattern Analysis and Machine Intelligence | 2004 | 994 |
| 34 | StrongL p -solutions of the Navier-Stokes equation inR m , with applications to weak solutions | Mathematische Zeitschrift | 1984 | 988 |
| 35 | Scenarios and Policy Aggregation in Optimization Under Uncertainty | Mathematics of Operations Research | 1991 | 973 |
| 36 | Total variation blind deconvolution | IEEE Transactions on Image Processing | 1998 | 928 |
| 37 | THE GEOMETRY OF DISSIPATIVE EVOLUTION EQUATIONS: THE POROUS MEDIUM EQUATION | Communications in Partial Differential Equations | 2001 | 885 |
| 38 | High-Resolution Radar via Compressed Sensing | IEEE Transactions on Signal Processing | 2009 | 859 |
| 39 | Implicit-explicit Runge-Kutta methods for time-dependent partial differential equations | Applied Numerical Mathematics | 1997 | 854 |
| 40 | Quantum Geometry and Black Hole Entropy | Physical Review Letters | 1998 | 850 |
| 41 | Cell motility driven by actin polymerization | Biophysical Journal | 1996 | 848 |
| 42 | Lie Groups, Lie Algebras, and Their Representations | Graduate Texts in Mathematics | 1984 | 847 |
| 43 | Computing geodesic paths on manifolds | Proceedings of the National Academy of Sciences of the United States of America | 1998 | 815 |
| 44 | Simultaneous structure and texture image inpainting | IEEE Transactions on Image Processing | 2003 | 790 |
| 45 | A fast sweeping method for Eikonal equations | Mathematics of Computation | 2004 | 774 |
| 46 | The diamond lemma for ring theory | Advances in Mathematics | 1978 | 770 |
| 47 | Fast Global Minimization of the Active Contour/Snake Model | Journal of Mathematical Imaging and Vision | 2007 | 763 |
| 48 | On orthogonal and symplectic matrix ensembles | Communications in Mathematical Physics | 1996 | 743 |
| 49 | Social influence and opinions | Journal of Mathematical Sociology | 1990 | 733 |
| 50 | Uniform Uncertainty Principle and Signal Recovery via Regularized Orthogonal Matching Pursuit | Foundations of Computational Mathematics | 2009 | 732 |
