Faculty of Bioengineering and Bioinformatics

587(top 1%)

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#	Title	Journal	Year	Citations
1	Mitochondrial membrane potential	Analytical Biochemistry	2018	1,161
2	Image-based analysis of lipid nanoparticle–mediated siRNA delivery, intracellular trafficking and endosomal escape	Nature Biotechnology	2013	1,060
3	HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis	Nucleic Acids Research	2018	660
4	An attempt to prevent senescence: A mitochondrial approach	Biochimica Et Biophysica Acta - Bioenergetics	2009	359
5	Antigen receptor repertoire profiling from RNA-seq data	Nature Biotechnology	2017	243
6	COVID-19 and Oxidative Stress	Biochemistry (Moscow)	2020	168
7	A biochemical approach to the problem of aging: “Megaproject” on membrane-penetrating ions. The first results and prospects	Biochemistry (Moscow)	2007	162
8	Guidelines for reporting of biocatalytic reactions	Trends in Biotechnology	2010	144
9	Nucleolus: A Central Hub for Nuclear Functions	Trends in Cell Biology	2019	119
10	Prevention of cardiolipin oxidation and fatty acid cycling as two antioxidant mechanisms of cationic derivatives of plastoquinone (SkQs)	Biochimica Et Biophysica Acta - Bioenergetics	2010	104
11	Paratrypanosoma Is a Novel Early-Branching Trypanosomatid	Current Biology	2013	96
12	Regulation of EGFR signal transduction by analogue-to-digital conversion in endosomes	ELife	2015	93
13	Improving the Post-Stroke Therapeutic Potency of Mesenchymal Multipotent Stromal Cells by Cocultivation With Cortical Neurons: The Role of Crosstalk Between Cells	Stem Cells Translational Medicine	2015	92
14	APPL endosomes are not obligatory endocytic intermediates but act as stable cargo-sorting compartments	Journal of Cell Biology	2015	87
15	A versatile pipeline for the multi-scale digital reconstruction and quantitative analysis of 3D tissue architecture	ELife	2015	84
16	Sorting Out Antibiotics' Mechanisms of Action: a Double Fluorescent Protein Reporter for High-Throughput Screening of Ribosome and DNA Biosynthesis Inhibitors	Antimicrobial Agents and Chemotherapy	2016	81
17	Mammalian CORVET Is Required for Fusion and Conversion of Distinct Early Endosome Subpopulations	Traffic	2014	80
18	Comparison of GENCODE and RefSeq gene annotation and the impact of reference geneset on variant effect prediction	BMC Genomics	2015	80
19	Mitochondrial reactive oxygen species are involved in chemoattractant-induced oxidative burst and degranulation of human neutrophils in vitro	European Journal of Cell Biology	2017	80
20	Thiamin diphosphate-dependent enzymes: from enzymology to metabolic regulation, drug design and disease models	FEBS Journal	2013	79
21	A Predictive 3D Multi-Scale Model of Biliary Fluid Dynamics in the Liver Lobule	Cell Systems	2017	79
22	Absence of cumulus cells during in vitro maturation affects lipid metabolism in bovine oocytes	American Journal of Physiology - Endocrinology and Metabolism	2013	76
23	Comparative genomics and evolution of regulons of the LacI-family transcription factors	Frontiers in Microbiology	2014	76
24	DUX4-induced constitutive DNA damage and oxidative stress contribute to aberrant differentiation of myoblasts from FSHD patients	Free Radical Biology and Medicine	2016	73
25	From Stockholm to Malawi: recent developments in studying human polyomaviruses	Journal of General Virology	2013	71
26	Molecular Insights into Rab7‐Mediated Endosomal Recruitment of Core Retromer: Deciphering the Role of Vps26 and Vps35	Traffic	2015	71
27	Mechanisms of Mitochondrial DNA Repair in Mammals	Biochemistry (Moscow)	2018	68
28	Lessons from the Discovery of Mitochondrial Fragmentation (Fission): A Review and Update	Cells	2019	65
29	Role of mitochondrial reactive oxygen species in age-related inflammatory activation of endothelium	Aging	2014	65
30	Aged insulin granules display reduced microtubule-dependent mobility and are disposed within actin-positive multigranular bodies	Proceedings of the National Academy of Sciences of the United States of America	2015	63
31	Gamma and Theta Rhythms in Biophysical Models of Hippocampal Circuits		2010	61
32	Comparative chloroplast genomics and phylogenetics of Fagopyrum esculentum ssp. ancestrale – A wild ancestor of cultivated buckwheat	BMC Plant Biology	2008	58
33	Role of restriction-modification systems in prokaryotic evolution and ecology	Biochemistry (Moscow)	2015	58
34	Three-dimensional spatially resolved geometrical and functional models of human liver tissue reveal new aspects of NAFLD progression	Nature Medicine	2019	58
35	Water Replacement Hypothesis in Atomic Details: Effect of Trehalose on the Structure of Single Dehydrated POPC Bilayers	Langmuir	2010	57
36	Water Replacement Hypothesis in Atomic Detail—Factors Determining the Structure of Dehydrated Bilayer Stacks	Biophysical Journal	2009	56
37	On the role of the mitochondrial 2-oxoglutarate dehydrogenase complex in amino acid metabolism	Amino Acids	2013	55
38	A full-body transcriptome and proteome resource for the European common carp	BMC Genomics	2016	55
39	Landscape of allele-specific transcription factor binding in the human genome	Nature Communications	2021	55
40	Progress and challenges for the machine learning-based design of fit-for-purpose monoclonal antibodies	MAbs	2022	51
41	Non-native glyceraldehyde-3-phosphate dehydrogenase can be an intrinsic component of amyloid structures	Biochimica Et Biophysica Acta - Proteins and Proteomics	2008	49
42	Correlative single‐molecule localization microscopy and electron tomography reveals endosome nanoscale domains	Traffic	2019	49
43	Integrative transcriptomic analysis suggests new autoregulatory splicing events coupled with nonsense-mediated mRNA decay	Nucleic Acids Research	2019	49
44	ITS phylogeny of West Asian Heracleum species and related taxa of Umbelliferae–Tordylieae W.D.J.Koch, with notes on evolution of their psbA-trnH sequences	Plant Systematics and Evolution	2008	44
45	High and Low Molecular Weight Hyaluronic Acid Differentially Influences Oxylipins Synthesis in Course of Neuroinflammation	International Journal of Molecular Sciences	2019	44
46	Glyceraldehyde-3-phosphate dehydrogenase: Aggregation mechanisms and impact on amyloid neurodegenerative diseases	International Journal of Biological Macromolecules	2017	43
47	A Global Approach for Quantitative Super Resolution and Electron Microscopy on Cryo and Epoxy Sections Using Self-labeling Protein Tags	Scientific Reports	2017	43
48	CpG traffic lights are markers of regulatory regions in human genome	BMC Genomics	2019	43
49	Regulation and Evolution of Malonate and Propionate Catabolism in Proteobacteria	Journal of Bacteriology	2012	42
50	Biliary Microbiota, Gallstone Disease and Infection with Opisthorchis felineus	PLoS Neglected Tropical Diseases	2016	42

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Faculty of Bioengineering and Bioinformatics

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