# | Title | Journal | Year | Citations |
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1 | QIIME allows analysis of high-throughput community sequencing data | Nature Methods | 2010 | 31,818 |
2 | Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes | Science | 2011 | 5,253 |
3 | Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition) | Autophagy | 2016 | 4,701 |
4 | Tensional homeostasis and the malignant phenotype | Cancer Cell | 2005 | 3,397 |
5 | Intestinal microbiota metabolism of l-carnitine, a nutrient in red meat, promotes atherosclerosis | Nature Medicine | 2013 | 3,355 |
6 | Guidelines for the use and interpretation of assays for monitoring autophagy | Autophagy | 2012 | 3,122 |
7 | Antimicrobial Autophagy: A Conserved Innate Immune Response in Drosophila | Journal of Innate Immunity | 2013 | 2,441 |
8 | Radiation and dual checkpoint blockade activate non-redundant immune mechanisms in cancer | Nature | 2015 | 1,955 |
9 | Periodontitis: from microbial immune subversion to systemic inflammation | Nature Reviews Immunology | 2015 | 1,796 |
10 | Coregulation of CD8+ T cell exhaustion by multiple inhibitory receptors during chronic viral infection | Nature Immunology | 2009 | 1,754 |
11 | Normalization and microbial differential abundance strategies depend upon data characteristics | Microbiome | 2017 | 1,434 |
12 | The oral microbiota: dynamic communities and host interactions | Nature Reviews Microbiology | 2018 | 1,143 |
13 | The role of Streptococcus pneumoniae virulence factors in host respiratory colonization and disease | Nature Reviews Microbiology | 2008 | 1,002 |
14 | Recognition of peptidoglycan from the microbiota by Nod1 enhances systemic innate immunity | Nature Medicine | 2010 | 966 |
15 | Inhibitors of cathepsin L prevent severe acute respiratory syndrome coronavirus entry | Proceedings of the National Academy of Sciences of the United States of America | 2005 | 935 |
16 | CRISPR-engineered T cells in patients with refractory cancer | Science | 2020 | 872 |
17 | Beyond the red complex and into more complexity: the polymicrobial synergy and dysbiosis (PSD) model of periodontal disease etiology | Molecular Oral Microbiology | 2012 | 850 |
18 | Tumor Interferon Signaling Regulates a Multigenic Resistance Program to Immune Checkpoint Blockade | Cell | 2016 | 830 |
19 | Commensal bacteria at the interface of host metabolism and the immune system | Nature Immunology | 2013 | 758 |
20 | Association Between Breast Milk Bacterial Communities and Establishment and Development of the Infant Gut Microbiome | JAMA Pediatrics | 2017 | 749 |
21 | Ras is essential for nerve growth factor- and phorbol ester-induced tyrosine phosphorylation of MAP kinases | Cell | 1992 | 728 |
22 | LIGHT, a New Member of the TNF Superfamily, and Lymphotoxin α Are Ligands for Herpesvirus Entry Mediator | Immunity | 1998 | 720 |
23 | Lipid-Associated Macrophages Control Metabolic Homeostasis in a Trem2-Dependent Manner | Cell | 2019 | 718 |
24 | Enterotypes in the landscape of gut microbial community composition | Nature Microbiology | 2018 | 717 |
25 | Zika virus protection by a single low-dose nucleoside-modified mRNA vaccination | Nature | 2017 | 699 |
26 | Comprehensive mapping of immune perturbations associated with severe COVID-19 | Science Immunology | 2020 | 677 |
27 | Phase and Antigenic Variation in Bacteria | Clinical Microbiology Reviews | 2004 | 664 |
28 | Immunity in Drosophila melanogaster — from microbial recognition to whole-organism physiology | Nature Reviews Immunology | 2014 | 661 |
29 | Correlation Between Intraluminal Oxygen Gradient and Radial Partitioning of Intestinal Microbiota | Gastroenterology | 2014 | 658 |
30 | Coronavirus Pathogenesis | Advances in Virus Research | 2011 | 655 |
31 | Global landscape of HIV–human protein complexes | Nature | 2012 | 651 |
32 | Inflammation, Antibiotics, and Diet as Environmental Stressors of the Gut Microbiome in Pediatric Crohn’s Disease | Cell Host and Microbe | 2015 | 646 |
33 | Innate lymphoid cells regulate CD4+ T-cell responses to intestinal commensal bacteria | Nature | 2013 | 639 |
34 | Innate Lymphoid Cells Promote Anatomical Containment of Lymphoid-Resident Commensal Bacteria | Science | 2012 | 638 |
35 | TSLP Elicits IL-33–Independent Innate Lymphoid Cell Responses to Promote Skin Inflammation | Science Translational Medicine | 2013 | 618 |
36 | Modulation of Cell Proliferation and Differentiation through Substrate-dependent Changes in Fibronectin Conformation | Molecular Biology of the Cell | 1999 | 613 |
37 | Disruption of TET2 promotes the therapeutic efficacy of CD19-targeted T cells | Nature | 2018 | 574 |
38 | Identification of a Titin-Derived HLA-A1–Presented Peptide as a Cross-Reactive Target for Engineered MAGE A3–Directed T Cells | Science Translational Medicine | 2013 | 539 |
39 | Crystal Structure of Glycoprotein B from Herpes Simplex Virus 1 | Science | 2006 | 493 |
40 | Rapid evolution of the human gut virome | Proceedings of the National Academy of Sciences of the United States of America | 2013 | 489 |
41 | Diversity of receptors binding HIV on dendritic cell subsets | Nature Immunology | 2002 | 483 |
42 | Three Classes of Cell Surface Receptors for Alphaherpesvirus Entry | Virology | 2000 | 467 |
43 | Type III Interferons Produced by Human Placental Trophoblasts Confer Protection against Zika Virus Infection | Cell Host and Microbe | 2016 | 464 |
44 | Induction of resistance to chimeric antigen receptor T cell therapy by transduction of a single leukemic B cell | Nature Medicine | 2018 | 459 |
45 | Comparison of placenta samples with contamination controls does not provide evidence for a distinct placenta microbiota | Microbiome | 2016 | 447 |
46 | HIV: Cell Binding and Entry | Cold Spring Harbor Perspectives in Medicine | 2012 | 438 |
47 | Contemporary H3N2 influenza viruses have a glycosylation site that alters binding of antibodies elicited by egg-adapted vaccine strains | Proceedings of the National Academy of Sciences of the United States of America | 2017 | 437 |
48 | EphrinB2 is the entry receptor for Nipah virus, an emergent deadly paramyxovirus | Nature | 2005 | 434 |
49 | Immunization with vaccinia virus induces polyfunctional and phenotypically distinctive CD8+ T cell responses | Journal of Experimental Medicine | 2007 | 428 |
50 | Comparative metabolomics in vegans and omnivores reveal constraints on diet-dependent gut microbiota metabolite production | Gut | 2016 | 428 |