| # | Title | Journal | Year | Citations |
|---|
| 1 | IMG: the integrated microbial genomes database and comparative analysis system | Nucleic Acids Research | 2012 | 1,210 |
| 2 | The minimum information about a genome sequence (MIGS) specification | Nature Biotechnology | 2008 | 1,069 |
| 3 | IMG ER: a system for microbial genome annotation expert review and curation | Bioinformatics | 2009 | 804 |
| 4 | Toward an Online Repository of Standard Operating Procedures (SOPs) for (Meta)genomic Annotation | OMICS A Journal of Integrative Biology | 2008 | 598 |
| 5 | The integrated microbial genomes (IMG) system | Nucleic Acids Research | 2006 | 355 |
| 6 | IMG/M: a data management and analysis system for metagenomes | Nucleic Acids Research | 2007 | 309 |
| 7 | High-resolution metagenomics targets specific functional types in complex microbial communities | Nature Biotechnology | 2008 | 254 |
| 8 | IMG/M: the integrated metagenome data management and comparative analysis system | Nucleic Acids Research | 2012 | 242 |
| 9 | The integrated microbial genomes system: an expanding comparative analysis resource | Nucleic Acids Research | 2010 | 237 |
| 10 | The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes | Standards in Genomic Sciences | 2009 | 218 |
| 11 | The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions | Nucleic Acids Research | 2007 | 179 |
| 12 | IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses | Nucleic Acids Research | 2016 | 177 |
| 13 | IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes | Nucleic Acids Research | 2019 | 174 |
| 14 | Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21T) | Standards in Genomic Sciences | 2011 | 115 |
| 15 | Complete genome sequence of Kytococcus sedentarius type strain (541T) | Standards in Genomic Sciences | 2009 | 100 |
| 16 | Complete genome sequence of the Medicago microsymbiont Ensifer (Sinorhizobium) medicae strain WSM419 | Standards in Genomic Sciences | 2010 | 100 |
| 17 | Complete genome sequence of Odoribacter splanchnicus type strain (1651/6T) | Standards in Genomic Sciences | 2011 | 96 |
| 18 | An experimental metagenome data management and analysis system | Bioinformatics | 2006 | 81 |
| 19 | Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended descriptions of the order Planctomycetales and the family Planctomycetaceae | Standards in Genomic Sciences | 2014 | 76 |
| 20 | Complete genome sequence of Haliangium ochraceum type strain (SMP-2T) | Standards in Genomic Sciences | 2010 | 70 |
| 21 | Genome Sequence of the Fleming Strain of Micrococcus luteus , a Simple Free-Living Actinobacterium | Journal of Bacteriology | 2010 | 68 |
| 22 | Draft genome sequence of Halomonas lutea strain YIM 91125T (DSM 23508T) isolated from the alkaline Lake Ebinur in Northwest China | Standards in Genomic Sciences | 2015 | 65 |
| 23 | Complete genome sequence of Rhizobium leguminosarum bv trifolii strain WSM2304, an effective microsymbiont of the South American clover Trifolium polymorphum. | Standards in Genomic Sciences | 2010 | 60 |
| 24 | Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1T), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Sphaerochaeta | Standards in Genomic Sciences | 2012 | 58 |
| 25 | Improving Microbial Genome Annotations in an Integrated Database Context | PLoS ONE | 2013 | 54 |
| 26 | Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System | PLoS ONE | 2009 | 54 |
| 27 | Complete genome sequence of Rhizobium leguminosarum bv. trifolii strain WSM1325, an effective microsymbiont of annual Mediterranean clovers. | Standards in Genomic Sciences | 2010 | 53 |
| 28 | Complete genome sequence of Desulfobulbus propionicus type strain (1pr3T) | Standards in Genomic Sciences | 2011 | 51 |
| 29 | Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010. | Standards in Genomic Sciences | 2011 | 51 |
| 30 | Complete genome sequence of Truepera radiovictrix type strain (RQ-24T) | Standards in Genomic Sciences | 2011 | 46 |
| 31 | Complete genome sequence of Isosphaera pallida type strain (IS1BT) | Standards in Genomic Sciences | 2011 | 46 |
| 32 | Complete genome sequence of Rhodothermus marinus type strain (R-10T) | Standards in Genomic Sciences | 2009 | 45 |
| 33 | Complete genome sequence of Veillonella parvula type strain (Te3T) | Standards in Genomic Sciences | 2010 | 44 |
| 34 | Complete genome sequence of Olsenella uli type strain (VPI D76D-27CT) | Standards in Genomic Sciences | 2010 | 43 |
| 35 | IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project | PLoS ONE | 2012 | 43 |
| 36 | Complete genome sequence of Spirosoma linguale type strain (1T) | Standards in Genomic Sciences | 2010 | 40 |
| 37 | Complete genome sequence of Arcobacter nitrofigilis type strain (CIT) | Standards in Genomic Sciences | 2010 | 40 |
| 38 | Habitat-Lite: A GSC Case Study Based on Free Text Terms for Environmental Metadata | OMICS A Journal of Integrative Biology | 2008 | 39 |
| 39 | Complete genome sequence of Actinosynnema mirum type strain (101T) | Standards in Genomic Sciences | 2009 | 38 |
| 40 | Complete genome sequence of Cellulomonas flavigena type strain (134T) | Standards in Genomic Sciences | 2010 | 38 |
| 41 | Annotation of metagenome short reads using proxygenes | Bioinformatics | 2008 | 37 |
| 42 | Complete genome sequence of Eggerthella lenta type strain (VPI 0255T) | Standards in Genomic Sciences | 2009 | 37 |
| 43 | Complete genome sequence of Desulfarculus baarsii type strain (2st14T) | Standards in Genomic Sciences | 2010 | 37 |
| 44 | Complete genome sequence of the sulfur compounds oxidizing chemolithoautotroph Sulfuricurvum kujiense type strain (YK-1T) | Standards in Genomic Sciences | 2012 | 37 |
| 45 | Complete genome sequence of Sulfurimonas autotrophica type strain (OK10T) | Standards in Genomic Sciences | 2010 | 37 |
| 46 | Complete genome sequence of Desulfomicrobium baculatum type strain (XT) | Standards in Genomic Sciences | 2009 | 36 |
| 47 | Complete genome sequence of the extremely halophilic Halanaerobium praevalens type strain (GSLT) | Standards in Genomic Sciences | 2011 | 36 |
| 48 | A Molecular Study of Microbe Transfer between Distant Environments | PLoS ONE | 2008 | 36 |
| 49 | Complete genome sequence of Desulfotomaculum acetoxidans type strain (5575T) | Standards in Genomic Sciences | 2009 | 35 |
| 50 | Complete genome sequence of Nakamurella multipartita type strain (Y-104T) | Standards in Genomic Sciences | 2010 | 35 |
