| # | Title | Journal | Year | Citations |
|---|
| 1 | Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP | Plant Genome | 2011 | 1,588 |
| 2 | Status and Prospects of Association Mapping in Plants | Plant Genome | 2008 | 1,118 |
| 3 | Genotyping‐by‐Sequencing for Plant Breeding and Genetics | Plant Genome | 2012 | 703 |
| 4 | Genomic Selection in Wheat Breeding using Genotyping‐by‐Sequencing | Plant Genome | 2012 | 556 |
| 5 | GAPIT Version 2: An Enhanced Integrated Tool for Genomic Association and Prediction | Plant Genome | 2016 | 421 |
| 6 | Identification of Four Soybean Reference Genes for Gene Expression Normalization | Plant Genome | 2008 | 309 |
| 7 | An Expanded Maize Gene Expression Atlas based on RNA Sequencing and its Use to Explore Root Development | Plant Genome | 2016 | 289 |
| 8 | Novel Methods to Optimize Genotypic Imputation for Low‐Coverage, Next‐Generation Sequence Data in Crop Plants | Plant Genome | 2014 | 241 |
| 9 | The First 50 Plant Genomes | Plant Genome | 2013 | 228 |
| 10 | Evaluation of Genomic Prediction Methods for Fusarium Head Blight Resistance in Wheat | Plant Genome | 2012 | 220 |
| 11 | Accuracy and Training Population Design for Genomic Selection on Quantitative Traits in Elite North American Oats | Plant Genome | 2011 | 214 |
| 12 | Genomic Selection Accuracy using Multifamily Prediction Models in a Wheat Breeding Program | Plant Genome | 2011 | 208 |
| 13 | Genomic Selection Accuracy using Multifamily Prediction Models in a Wheat Breeding Program | Plant Genome | 2011 | 206 |
| 14 | Status and prospects of genome‐wide association studies in plants | Plant Genome | 2021 | 200 |
| 15 | Software for Genome‐Wide Association Studies in Autopolyploids and Its Application to Potato | Plant Genome | 2016 | 191 |
| 16 | QTLseqr: An R Package for Bulk Segregant Analysis with Next‐Generation Sequencing | Plant Genome | 2018 | 187 |
| 17 | Genomic‐Enabled Prediction Based on Molecular Markers and Pedigree Using the Bayesian Linear Regression Package in R | Plant Genome | 2010 | 183 |
| 18 | Combining High‐Throughput Phenotyping and Genomic Information to Increase Prediction and Selection Accuracy in Wheat Breeding | Plant Genome | 2018 | 175 |
| 19 | A Population Structure and Genome‐Wide Association Analysis on the USDA Soybean Germplasm Collection | Plant Genome | 2015 | 174 |
| 20 | Sweet Sorghum Genetic Diversity and Association Mapping for Brix and Height | Plant Genome | 2009 | 168 |
| 21 | Genomic Selection for Processing and End‐Use Quality Traits in the CIMMYT Spring Bread Wheat Breeding Program | Plant Genome | 2016 | 161 |
| 22 | Genome‐Wide Association Mapping of Fusarium Head Blight Resistance in Wheat using Genotyping‐by‐Sequencing | Plant Genome | 2016 | 161 |
| 23 | Marker-Assisted Selection to Pyramid Nematode Resistance and the High Oleic Trait in Peanut | Plant Genome | 2011 | 160 |
| 24 | AGHmatrix: R Package to Construct Relationship Matrices for Autotetraploid and Diploid Species: A Blueberry Example | Plant Genome | 2016 | 158 |
| 25 | An Improved Consensus Linkage Map of Barley Based on Flow-Sorted Chromosomes and Single Nucleotide Polymorphism Markers | Plant Genome | 2011 | 150 |
| 26 | Accuracy of Genomewide Selection for Different Traits with Constant Population Size, Heritability, and Number of Markers | Plant Genome | 2013 | 148 |
| 27 | Genomic Selection for Predicting Fusarium Head Blight Resistance in a Wheat Breeding Program | Plant Genome | 2015 | 145 |
| 28 | Genomic Selection for Quantitative Adult Plant Stem Rust Resistance in Wheat | Plant Genome | 2014 | 143 |
| 29 | Multitrait, Random Regression, or Simple Repeatability Model in High‐Throughput Phenotyping Data Improve Genomic Prediction for Wheat Grain Yield | Plant Genome | 2017 | 138 |
| 30 | Genome‐Wide Association Study Identifies Candidate Loci Underlying Agronomic Traits in a Middle American Diversity Panel of Common Bean | Plant Genome | 2016 | 136 |
| 31 | Genome Wide Association Mapping of Sclerotinia sclerotiorum Resistance in Soybean with a Genotyping‐by‐Sequencing Approach | Plant Genome | 2014 | 135 |
| 32 | Marker‐Assisted Backcrossing to Introgress Resistance to Fusarium Wilt Race 1 and Ascochyta Blight in C 214, an Elite Cultivar of Chickpea | Plant Genome | 2014 | 132 |
| 33 | Utility of RNA Sequencing for Analysis of Maize Reproductive Transcriptomes | Plant Genome | 2011 | 131 |
| 34 | Assessing Genomic Selection Prediction Accuracy in a Dynamic Barley Breeding Population | Plant Genome | 2015 | 130 |
| 35 | Genome‐Wide Association and Prediction Reveals Genetic Architecture of Cassava Mosaic Disease Resistance and Prospects for Rapid Genetic Improvement | Plant Genome | 2016 | 120 |
| 36 | Fast‐Track Introgression of “QTL‐hotspot” for Root Traits and Other Drought Tolerance Traits in JG 11, an Elite and Leading Variety of Chickpea | Plant Genome | 2013 | 118 |
| 37 | Genetic Gain from Phenotypic and Genomic Selection for Quantitative Resistance to Stem Rust of Wheat | Plant Genome | 2015 | 118 |
| 38 | Genomic Prediction of Genotype × Environment Interaction Kernel Regression Models | Plant Genome | 2016 | 118 |
| 39 | An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment | Plant Genome | 2009 | 116 |
| 40 | Dissection of Genetic Factors underlying Wheat Kernel Shape and Size in an Elite × Nonadapted Cross using a High Density SNP Linkage Map | Plant Genome | 2016 | 116 |
| 41 | The Amaranth Genome: Genome, Transcriptome, and Physical Map Assembly | Plant Genome | 2016 | 115 |
| 42 | Improving Genetic Gain with Genomic Selection in Autotetraploid Potato | Plant Genome | 2016 | 115 |
| 43 | Genetic Characterization of the Soybean Nested Association Mapping Population | Plant Genome | 2017 | 114 |
| 44 | Association Mapping for Grain Quality in a Diverse Sorghum Collection | Plant Genome | 2012 | 113 |
| 45 | Cowpea-Soybean Synteny Clarified through an Improved Genetic Map | Plant Genome | 2011 | 108 |
| 46 | Increasing Genomic‐Enabled Prediction Accuracy by Modeling Genotype × Environment Interactions in Kansas Wheat | Plant Genome | 2017 | 107 |
| 47 | Genome-Wide Association Analysis Identifies Candidate Genes Associated with Iron Deficiency Chlorosis in Soybean | Plant Genome | 2011 | 106 |
| 48 | Subgenomic Diversity Patterns Caused by Directional Selection in Bread Wheat Gene Pools | Plant Genome | 2015 | 105 |
| 49 | AlphaSim: Software for Breeding Program Simulation | Plant Genome | 2016 | 105 |
| 50 | The Triticeae Toolbox: Combining Phenotype and Genotype Data to Advance Small‐Grains Breeding | Plant Genome | 2016 | 104 |
