| # | Title | Journal | Year | Citations |
|---|
| 1 | Differential regulation of transcript accumulation and alternative splicing of a DREB2 homolog under abiotic stress conditions in common wheat | Genes and Genetic Systems | 2006 | 230 |
| 2 | The phosphatase system in Saccharomyces cerevisiae. | Genes and Genetic Systems | 1997 | 210 |
| 3 | Patterns of codon usage bias in three dicot and four monocot plant species. | Genes and Genetic Systems | 2003 | 184 |
| 4 | OsNAC6, a member of the NAC gene family, is induced by various stresses in rice | Genes and Genetic Systems | 2005 | 158 |
| 5 | Time scale of eutherian evolution estimated without assuming a constant rate of molecular evolution. | Genes and Genetic Systems | 2003 | 134 |
| 6 | Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak. | Genes and Genetic Systems | 1999 | 114 |
| 7 | Leaf-variegated mutations and their responsible genes in Arabidopsis thaliana. | Genes and Genetic Systems | 2003 | 114 |
| 8 | The mitochondrial genome of spotted green pufferfish Tetraodon nigroviridis (Teleostei: Tetraodontiformes) and divergence time estimation among model organisms in fishes | Genes and Genetic Systems | 2006 | 112 |
| 9 | The einkorn wheat (Triticum monococcum) mutant, maintained vegetative phase, is caused by a deletion in the VRN1 gene | Genes and Genetic Systems | 2007 | 109 |
| 10 | MODA: An efficient algorithm for network motif discovery in biological networks | Genes and Genetic Systems | 2009 | 109 |
| 11 | DNA sequence from a fossil pollen of Abies spp. from Pleistocene peat. | Genes and Genetic Systems | 1996 | 107 |
| 12 | Molecular characterization of mutations induced by gamma irradiation in rice | Genes and Genetic Systems | 2009 | 101 |
| 13 | The exceptional mitochondrial DNA system of the mussel family Mytilidae | Genes and Genetic Systems | 2000 | 99 |
| 14 | Complete Nucleotide Sequence and Gene Rearrangement of the Mitochondrial Genome of the Japanese Pond Frog Rana nigromaculata. | Genes and Genetic Systems | 2001 | 99 |
| 15 | Search for the wild ancestor of buckwheat II. Taxonomy of Fagopyrum (Polygonaceae) species based on morphology, isozymes and cpDNA variability. | Genes and Genetic Systems | 1996 | 98 |
| 16 | Decreased physical performance of congenic mice with mismatch between the nuclear and the mitochondrial genome. | Genes and Genetic Systems | 1998 | 95 |
| 17 | Differential and coordinated expression of Cbf and Cor/Lea genes during long-term cold acclimation in two wheat cultivars showing distinct levels of freezing tolerance | Genes and Genetic Systems | 2005 | 94 |
| 18 | Extensive interbreeding occurred among multiple matriarchal ancestors during the domestication of dogs: Evidence from inter- and intraspecies polymorphisms in the D-loop region of mitochondrial DNA between dogs and wolves. | Genes and Genetic Systems | 1997 | 90 |
| 19 | Putative phospholipid hydroperoxide glutathione peroxidase gene from Arabidopsis thaliana induced by oxidative stress. | Genes and Genetic Systems | 1997 | 90 |
| 20 | Novel endonuclease in Archaea cleaving DNA with various branched structure. | Genes and Genetic Systems | 2002 | 88 |
| 21 | A genome-wide view of miniature inverted-repeat transposable elements (MITEs) in rice, Oryza sativa ssp. japonica | Genes and Genetic Systems | 2008 | 88 |
| 22 | Strategies to maintain the stability of the ribosomal RNA gene repeats -Collaboration of recombination, cohesion, and condensation- | Genes and Genetic Systems | 2006 | 87 |
| 23 | Establishment of a series of alien monosomic addition lines of Japanese bunching onion (Allium fistulosum L.) with extra chromosomes from shallot (A. cepa L. Aggregatum group). | Genes and Genetic Systems | 1996 | 84 |
| 24 | Structural and sequence diversity of eukaryotic transposable elements | Genes and Genetic Systems | 2019 | 84 |
| 25 | Two OsGASR genes, rice GAST homologue genes that are abundant in proliferating tissues, show different expression patterns in developing panicles | Genes and Genetic Systems | 2006 | 83 |
| 26 | Phylogeographic structure and late Quaternary population history of the Japanese oak Quercus mongolica var. crispula and related species revealed by chloroplast DNA variation | Genes and Genetic Systems | 2007 | 83 |
| 27 | Sex gene pool evolution and speciation: A new paradigm | Genes and Genetic Systems | 2000 | 82 |
| 28 | The gene for alternative oxidase-2(AOX2) from Arabidopsis thaliana consists of five exons unlike other AOX genes and is transcribed at an early stage during germination. | Genes and Genetic Systems | 2001 | 82 |
| 29 | Rice tillering dwarf mutant dwarf3 has increased leaf longevity during darkness-induced senescence or hydrogen peroxide-induced cell death | Genes and Genetic Systems | 2007 | 82 |
| 30 | Genetic analysis of DNA repair in the hyperthermophilic archaeon, Thermococcus kodakaraensis | Genes and Genetic Systems | 2010 | 82 |
| 31 | Gene admixture in the Silk Road region of China: Evidence from mtDNA and melanocortin 1 receptor polymorphism. | Genes and Genetic Systems | 2000 | 79 |
| 32 | Evolutionary relationships among rice species with AA genome based on SINE insertion analysis. | Genes and Genetic Systems | 2002 | 78 |
| 33 | RAPD, RFLP and SSLP analyses of phylogenetic relationships between cultivated and wild species of rice. | Genes and Genetic Systems | 2001 | 77 |
| 34 | SOG1: a master regulator of the DNA damage response in plants | Genes and Genetic Systems | 2015 | 77 |
| 35 | Paleo-demography of the Drosophila melanogaster subgroup. Application of the maximum likelihood method. | Genes and Genetic Systems | 1999 | 73 |
| 36 | Evolutionary trends of the mitochondrial lineage differentiation in species of genera Martes and Mustela. | Genes and Genetic Systems | 2000 | 72 |
| 37 | Overexpression of wheat alternative oxidase gene Waox1a alters respiration capacity and response to reactive oxygen species under low temperature in transgenic Arabidopsis | Genes and Genetic Systems | 2006 | 72 |
| 38 | The SMALL AND ROUND SEED1 (SRS1/DEP2) gene is involved in the regulation of seed size in rice | Genes and Genetic Systems | 2010 | 72 |
| 39 | Alu-derived cis-element regulates tumorigenesis-dependent gastric expression of GASDERMIN B (GSDMB) | Genes and Genetic Systems | 2010 | 72 |
| 40 | RNA secondary structure and compensatory evolution. | Genes and Genetic Systems | 1999 | 71 |
| 41 | Structure and transcriptional control of the flagellar master operon of Salmonella typhimurium. | Genes and Genetic Systems | 1999 | 70 |
| 42 | Two novel regulatory genes, fliT and fliZ, in the flagellar regulon of Salmonella. | Genes and Genetic Systems | 1999 | 70 |
| 43 | RIRE1, a retrotransposon from wild rice Oryza australiensis. | Genes and Genetic Systems | 1997 | 65 |
| 44 | New members of a cold-responsive group-3 Lea/Rab-related Cor gene family from common wheat (Triticum aestivum L.). | Genes and Genetic Systems | 2000 | 64 |
| 45 | Chromosomal assignment and deletion mapping of barley EST markers | Genes and Genetic Systems | 2005 | 64 |
| 46 | Reproductive barrier and genomic imprinting in the endosperm of flowering plants | Genes and Genetic Systems | 2007 | 64 |
| 47 | Comprehensive phylogeny of the family Sparidae (Perciformes: Teleostei) inferred from mitochondrial gene analyses | Genes and Genetic Systems | 2009 | 64 |
| 48 | The spatial expression patterns of DROOPING LEAF orthologs suggest a conserved function in grasses | Genes and Genetic Systems | 2009 | 64 |
| 49 | Plasmon analysis of Triticum (wheat) and Aegilops. 1. Production of alloplasmic common wheats and their fertilities. | Genes and Genetic Systems | 1996 | 63 |
| 50 | Interstitial telomere-like repeats in the Arabidopsis thaliana genome. | Genes and Genetic Systems | 2002 | 63 |
