| # | Title | Journal | Year | Citations |
|---|
| 1 | Pyrosequencing study of fecal microflora of autistic and control children | Anaerobe | 2010 | 811 |
| 2 | Taxonomic, Phylogenetic, and Ecological Diversity of Methanogenic Archaea | Anaerobe | 2000 | 699 |
| 3 | Reclassification of Clostridium difficile as Clostridioides difficile (Hall and O’Toole 1935) Prévot 1938 | Anaerobe | 2016 | 510 |
| 4 | A Novel Electrochemically Active and Fe(III)-reducing Bacterium Phylogenetically Related to Clostridium butyricum Isolated from a Microbial Fuel Cell | Anaerobe | 2001 | 485 |
| 5 | Microbiota profile in feces of breast- and formula-fed newborns by using fluorescence in situ hybridization (FISH) | Anaerobe | 2011 | 391 |
| 6 | Expansion of the Clostridium perfringens toxin-based typing scheme | Anaerobe | 2018 | 365 |
| 7 | A dynamic partnership: Celebrating our gut flora | Anaerobe | 2005 | 316 |
| 8 | Tolerance of Bifidobacterium human isolates to bile, acid and oxygen | Anaerobe | 2013 | 313 |
| 9 | The effect of pH, bile and calcium on the adhesion ability of probiotic enterococci of animal origin to the porcine jejunal epithelial cell line IPEC-J2 | Anaerobe | 2010 | 285 |
| 10 | Dissimilatory Amino Acid Metabolism in Human Colonic Bacteria | Anaerobe | 1997 | 278 |
| 11 | Establishment and development of lactic acid bacteria and bifidobacteria microbiota in breast-milk and the infant gut | Anaerobe | 2010 | 271 |
| 12 | Human-derived probiotic Lactobacillus reuteri demonstrate antimicrobial activities targeting diverse enteric bacterial pathogens | Anaerobe | 2008 | 254 |
| 13 | Differences in fecal microbial metabolites and microbiota of children with autism spectrum disorders | Anaerobe | 2018 | 249 |
| 14 | Fecal microbial metabolism of polyphenols and its effects on human gut microbiota | Anaerobe | 2013 | 245 |
| 15 | Rumen Bacterial Community Transition During Adaptation to High-grain Diet | Anaerobe | 2000 | 243 |
| 16 | GABA production and structure of gadB / gadC genes in Lactobacillus and Bifidobacterium strains from human microbiota | Anaerobe | 2016 | 238 |
| 17 | In vitro characterization of the impact of selected dietary fibers on fecal microbiota composition and short chain fatty acid production | Anaerobe | 2013 | 235 |
| 18 | Phylogenetic Analysis of Rumen Bacteria by Comparative Sequence Analysis of Cloned 16S rRNA Genesß | Anaerobe | 1998 | 233 |
| 19 | In vitro evaluation of the antimicrobial activity of a range of probiotics against pathogens: Evidence for the effects of organic acids | Anaerobe | 2012 | 215 |
| 20 | Impact of subacute ruminal acidosis (SARA) adaptation on rumen microbiota in dairy cattle using pyrosequencing | Anaerobe | 2013 | 211 |
| 21 | Antimicrobial effect of linalool and α-terpineol against periodontopathic and cariogenic bacteria | Anaerobe | 2012 | 207 |
| 22 | In vitro fermentation and prebiotic potential of novel low molecular weight polysaccharides derived from agar and alginate seaweeds | Anaerobe | 2012 | 204 |
| 23 | Quorum sensing in biofilms – How to destroy the bacterial citadels or their cohesion/power? | Anaerobe | 2011 | 192 |
| 24 | Fecal bacteriotherapy for recurrent Clostridium difficile infection | Anaerobe | 2009 | 191 |
| 25 | Clostridium difficile: An important pathogen of food animals | Anaerobe | 2006 | 185 |
| 26 | Microbiology of regressive autism | Anaerobe | 2012 | 183 |
| 27 | Antioxidant activity in vitro of the selenium-contained protein from the Se-enriched Bifidobacterium animalis 01 | Anaerobe | 2010 | 180 |
| 28 | Inhibition of spore germination, growth, and toxin activity of clinically relevant C. difficile strains by gut microbiota derived secondary bile acids | Anaerobe | 2017 | 175 |
| 29 | Analysis of the Rumen Bacterial Diversity under two Different Diet Conditions using Denaturing Gradient Gel Electrophoresis, Random Sequencing, and Statistical Ecology Approaches | Anaerobe | 2001 | 173 |
| 30 | Development of bacterial and bifidobacterial communities in feces of newborn babies | Anaerobe | 2003 | 171 |
| 31 | Incidence and ecology of Campylobacter jejuni and coli in animals | Anaerobe | 2009 | 168 |
| 32 | Chitosan oligosaccharides, dp 2–8, have prebiotic effect on the Bifidobacterium bifidium and Lactobacillus sp. | Anaerobe | 2002 | 166 |
| 33 | Life-threatening clostridial infections | Anaerobe | 2012 | 164 |
| 34 | Degradation and Utilization of Xylans by the Rumen AnaerobePrevotella bryantii(formerlyP. ruminicolasubsp.brevis) B14 | Anaerobe | 1997 | 160 |
| 35 | The Clostridium perfringensα-toxin | Anaerobe | 1999 | 158 |
| 36 | High-throughput 16S rRNA gene sequencing reveals alterations of intestinal microbiota in myalgic encephalomyelitis/chronic fatigue syndrome patients | Anaerobe | 2013 | 158 |
| 37 | Evidence-based review of probiotics for antibiotic-associated diarrhea and Clostridium difficile infections | Anaerobe | 2009 | 157 |
| 38 | The division “Synergistes” | Anaerobe | 2007 | 154 |
| 39 | Sphingolipids in Bacteria and Fungi | Anaerobe | 2001 | 153 |
| 40 | Archaea as emerging organisms in complex human microbiomes | Anaerobe | 2011 | 152 |
| 41 | Virulence factors of Clostridium difficile and their role during infection | Anaerobe | 2016 | 152 |
| 42 | The Taxonomic Status of the Fermentative Halophilic Anaerobic Bacteria: Description of Haloanaerobiales ord. nov., Halobacteroidaceae fam. nov., Orenia gen. nov. and further Taxonomic Rearrangements at the Genus and Species Level | Anaerobe | 1995 | 151 |
| 43 | Screening lactic acid bacteria from swine origins for multistrain probiotics based on in vitro functional properties | Anaerobe | 2010 | 150 |
| 44 | Necrotic enteritis in chickens: A paradigm of enteric infection by Clostridium perfringens type A | Anaerobe | 2009 | 144 |
| 45 | Restoration of short chain fatty acid and bile acid metabolism following fecal microbiota transplantation in patients with recurrent Clostridium difficile infection | Anaerobe | 2018 | 144 |
| 46 | Fusobacterium necrophorum infections in animals: Pathogenesis and pathogenic mechanisms | Anaerobe | 2005 | 143 |
| 47 | Occurrence and activity of human intestinal bacteria involved in the conversion of dietary lignans | Anaerobe | 2006 | 143 |
| 48 | Prebiotic effects of neoagaro-oligosaccharides prepared by enzymatic hydrolysis of agarose | Anaerobe | 2006 | 142 |
| 49 | Challenging the problem of clostridial identification with matrix-assisted laser desorption and ionization–time-of-flight mass spectrometry (MALDI–TOF MS) | Anaerobe | 2008 | 141 |
| 50 | Characterization of bacterial community associated to biofilms of corroded oil pipelines from the southeast of Mexico | Anaerobe | 2006 | 137 |
