| # | Title | Journal | Year | Citations |
|---|
| 1 | A Phylogenomic View of Ecological Specialization in the Lachnospiraceae, a Family of Digestive Tract-Associated Bacteria | Genome Biology and Evolution | 2014 | 601 |
| 2 | Comparative Genomics of the Odorant-Binding and Chemosensory Protein Gene Families across the Arthropoda: Origin and Evolutionary History of the Chemosensory System | Genome Biology and Evolution | 2011 | 468 |
| 3 | On the Immortality of Television Sets: "Function" in the Human Genome According to the Evolution-Free Gospel of ENCODE | Genome Biology and Evolution | 2013 | 427 |
| 4 | An Expanded Genomic Representation of the Phylum Cyanobacteria | Genome Biology and Evolution | 2014 | 326 |
| 5 | Functional Convergence in Reduced Genomes of Bacterial Symbionts Spanning 200 My of Evolution | Genome Biology and Evolution | 2010 | 320 |
| 6 | Comparative Analysis of Transposable Elements Highlights Mobilome Diversity and Evolution in Vertebrates | Genome Biology and Evolution | 2015 | 302 |
| 7 | Small, Smaller, Smallest: The Origins and Evolution of Ancient Dual Symbioses in a Phloem-Feeding Insect | Genome Biology and Evolution | 2013 | 276 |
| 8 | The Genomic Diversification of the Whole Acinetobacter Genus: Origins, Mechanisms, and Consequences | Genome Biology and Evolution | 2014 | 269 |
| 9 | Phylogenomic Data Support a Seventh Order of Methylotrophic Methanogens and Provide Insights into the Evolution of Methanogenesis | Genome Biology and Evolution | 2013 | 249 |
| 10 | Genomes of Stigonematalean Cyanobacteria (Subsection V) and the Evolution of Oxygenic Photosynthesis from Prokaryotes to Plastids | Genome Biology and Evolution | 2013 | 234 |
| 11 | Environmental Epigenetics and a Unified Theory of the Molecular Aspects of Evolution: A Neo-Lamarckian Concept that Facilitates Neo-Darwinian Evolution | Genome Biology and Evolution | 2015 | 232 |
| 12 | Origins and Evolution of MicroRNA Genes in Plant Species | Genome Biology and Evolution | 2012 | 231 |
| 13 | Phylogenomics of Sterol Synthesis: Insights into the Origin, Evolution, and Diversity of a Key Eukaryotic Feature | Genome Biology and Evolution | 2009 | 229 |
| 14 | Paleopolyploidy in the Brassicales: Analyses of the Cleome Transcriptome Elucidate the History of Genome Duplications in Arabidopsis and Other Brassicales | Genome Biology and Evolution | 2009 | 226 |
| 15 | Evolution and Diversity of Transposable Elements in Vertebrate Genomes | Genome Biology and Evolution | 2017 | 226 |
| 16 | High Variability of Mitochondrial Gene Order among Fungi | Genome Biology and Evolution | 2014 | 223 |
| 17 | ThePseudomonas aeruginosaPan-Genome Provides New Insights on Its Population Structure, Horizontal Gene Transfer, and Pathogenicity | Genome Biology and Evolution | 2019 | 223 |
| 18 | Strikingly Bacteria-Like and Gene-Rich Mitochondrial Genomes throughout Jakobid Protists | Genome Biology and Evolution | 2013 | 222 |
| 19 | The Tree and Net Components of Prokaryote Evolution | Genome Biology and Evolution | 2010 | 221 |
| 20 | Identification and Properties of 1,119 Candidate LincRNA Loci in the Drosophila melanogaster Genome | Genome Biology and Evolution | 2012 | 217 |
| 21 | A Coxiella-Like Endosymbiont Is a Potential Vitamin Source for the Lone Star Tick | Genome Biology and Evolution | 2015 | 204 |
| 22 | Comparative Metagenomics and Population Dynamics of the Gut Microbiota in Mother and Infant | Genome Biology and Evolution | 2010 | 202 |
| 23 | Genome Degeneration and Adaptation in a Nascent Stage of Symbiosis | Genome Biology and Evolution | 2014 | 200 |
| 24 | Evolutionary Origins and Dynamics of Octoploid Strawberry Subgenomes Revealed by Dense Targeted Capture Linkage Maps | Genome Biology and Evolution | 2014 | 197 |
| 25 | Targeted Amplicon Sequencing (TAS): A Scalable Next-Gen Approach to Multilocus, Multitaxa Phylogenetics | Genome Biology and Evolution | 2011 | 196 |
| 26 | Sequencing Angiosperm Plastid Genomes Made Easy: A Complete Set of Universal Primers and a Case Study on the Phylogeny of Saxifragales | Genome Biology and Evolution | 2013 | 195 |
| 27 | Transposable Elements: Powerful Contributors to Angiosperm Evolution and Diversity | Genome Biology and Evolution | 2013 | 195 |
| 28 | The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference | Genome Biology and Evolution | 2016 | 195 |
| 29 | The Sequence of a 1.8-Mb Bacterial Linear Plasmid Reveals a Rich Evolutionary Reservoir of Secondary Metabolic Pathways | Genome Biology and Evolution | 2010 | 193 |
| 30 | The Complete Chloroplast Genome Sequence of Cephalotaxus oliveri (Cephalotaxaceae): Evolutionary Comparison of Cephalotaxus Chloroplast DNAs and Insights into the Loss of Inverted Repeat Copies in Gymnosperms | Genome Biology and Evolution | 2013 | 190 |
| 31 | Evolutionary History of the Clostridium difficile Pathogenicity Locus | Genome Biology and Evolution | 2014 | 190 |
| 32 | The Complete Genome Sequence of the Phytopathogenic Fungus Sclerotinia sclerotiorum Reveals Insights into the Genome Architecture of Broad Host Range Pathogens | Genome Biology and Evolution | 2017 | 187 |
| 33 | Deletional Bias across the Three Domains of Life | Genome Biology and Evolution | 2009 | 186 |
| 34 | Massive Genomic Decay in Serratia symbiotica, a Recently Evolved Symbiont of Aphids | Genome Biology and Evolution | 2011 | 186 |
| 35 | Genome Sequence and Comparative Genome Analysis of Lactobacillus casei: Insights into Their Niche-Associated Evolution | Genome Biology and Evolution | 2009 | 180 |
| 36 | Growth Temperature and Genome Size in Bacteria Are Negatively Correlated, Suggesting Genomic Streamlining During Thermal Adaptation | Genome Biology and Evolution | 2013 | 179 |
| 37 | Fungal Cytochrome P450 Monooxygenases: Their Distribution, Structure, Functions, Family Expansion, and Evolutionary Origin | Genome Biology and Evolution | 2014 | 179 |
| 38 | MicroRNA in Teleost Fish | Genome Biology and Evolution | 2014 | 175 |
| 39 | Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants | Genome Biology and Evolution | 2015 | 175 |
| 40 | Genome-Wide Phylogenetic Comparative Analysis of Plant Transcriptional Regulation: A Timeline of Loss, Gain, Expansion, and Correlation with Complexity | Genome Biology and Evolution | 2010 | 174 |
| 41 | Evolutionary Genomics of Staphylococcus aureus Reveals Insights into the Origin and Molecular Basis of Ruminant Host Adaptation | Genome Biology and Evolution | 2010 | 174 |
| 42 | Plant Mitochondrial Genome Evolution Can Be Explained by DNA Repair Mechanisms | Genome Biology and Evolution | 2013 | 168 |
| 43 | Genome Size and Transposable Element Content as Determined by High-Throughput Sequencing in Maize and Zea luxurians | Genome Biology and Evolution | 2011 | 167 |
| 44 | Adaptation to Low Salinity Promotes Genomic Divergence in Atlantic Cod ( Gadus morhua L.) | Genome Biology and Evolution | 2015 | 167 |
| 45 | Methanogenesis and the Wood–Ljungdahl Pathway: An Ancient, Versatile, and Fragile Association | Genome Biology and Evolution | 2016 | 167 |
| 46 | A Survey of Combinatorial Methods for Phylogenetic Networks | Genome Biology and Evolution | 2011 | 165 |
| 47 | Extreme RNA Editing in Coding Islands and Abundant Microsatellites in Repeat Sequences of Selaginella moellendorffii Mitochondria: The Root of Frequent Plant mtDNA Recombination in Early Tracheophytes | Genome Biology and Evolution | 2011 | 164 |
| 48 | Comparative Chloroplast Genomics Reveals the Evolution of Pinaceae Genera and Subfamilies | Genome Biology and Evolution | 2010 | 162 |
| 49 | On the Origin and Evolution of Vertebrate Olfactory Receptor Genes: Comparative Genome Analysis Among 23 Chordate Species | Genome Biology and Evolution | 2009 | 161 |
| 50 | De Novo Assembly and Annotation of the Asian Tiger Mosquito (Aedes albopictus) Repeatome with dnaPipeTE from Raw Genomic Reads and Comparative Analysis with the Yellow Fever Mosquito (Aedes aegypti) | Genome Biology and Evolution | 2015 | 161 |
