| # | Title | Journal | Year | Citations |
|---|
| 1 | What is the Healthy Gut Microbiota Composition? A Changing Ecosystem across Age, Environment, Diet, and Diseases | Microorganisms | 2019 | 1,796 |
| 2 | The Controversial Role of Human Gut Lachnospiraceae | Microorganisms | 2020 | 777 |
| 3 | The Influence of Probiotics on the Firmicutes/Bacteroidetes Ratio in the Treatment of Obesity and Inflammatory Bowel disease | Microorganisms | 2020 | 713 |
| 4 | Antibiotic Pollution in the Environment: From Microbial Ecology to Public Policy | Microorganisms | 2019 | 579 |
| 5 | SARS-CoV-2 Spike Mutations, L452R, T478K, E484Q and P681R, in the Second Wave of COVID-19 in Maharashtra, India | Microorganisms | 2021 | 521 |
| 6 | Bacterial Multidrug Efflux Pumps: Much More Than Antibiotic Resistance Determinants | Microorganisms | 2016 | 486 |
| 7 | Bacterial Endophyte Colonization and Distribution within Plants | Microorganisms | 2017 | 426 |
| 8 | Gut Microbiota and Immune System Interactions | Microorganisms | 2020 | 309 |
| 9 | Transmission of Bacterial Endophytes | Microorganisms | 2017 | 308 |
| 10 | An Update on the Genus Aeromonas: Taxonomy, Epidemiology, and Pathogenicity | Microorganisms | 2020 | 288 |
| 11 | Akkermansia muciniphila in the Human Gastrointestinal Tract: When, Where, and How? | Microorganisms | 2018 | 286 |
| 12 | Epidemiology of Mucormycosis in India | Microorganisms | 2021 | 283 |
| 13 | Microbial Fermentation of Dietary Protein: An Important Factor in Diet–Microbe–Host Interaction | Microorganisms | 2019 | 281 |
| 14 | Bacterial Contaminants of Poultry Meat: Sources, Species, and Dynamics | Microorganisms | 2017 | 260 |
| 15 | Zoonotic Diseases: Etiology, Impact, and Control | Microorganisms | 2020 | 260 |
| 16 | Advances in Chemical and Biological Methods to Identify Microorganisms—From Past to Present | Microorganisms | 2019 | 246 |
| 17 | Microbial Biofilms and Chronic Wounds | Microorganisms | 2017 | 235 |
| 18 | EPS—Then and Now | Microorganisms | 2016 | 232 |
| 19 | Role of Oral Microbiota in Cancer Development | Microorganisms | 2019 | 231 |
| 20 | The Human Oral Microbiome in Health and Disease: From Sequences to Ecosystems | Microorganisms | 2020 | 231 |
| 21 | Bacteriocins, Antimicrobial Peptides from Bacterial Origin: Overview of Their Biology and Their Impact against Multidrug-Resistant Bacteria | Microorganisms | 2020 | 231 |
| 22 | Quorum-Sensing Regulation of Antimicrobial Resistance in Bacteria | Microorganisms | 2020 | 227 |
| 23 | Biological Control of Plant Pathogens: A Global Perspective | Microorganisms | 2022 | 223 |
| 24 | Antifungal Microbial Agents for Food Biopreservation—A Review | Microorganisms | 2017 | 217 |
| 25 | Gut–Skin Axis: Current Knowledge of the Interrelationship between Microbial Dysbiosis and Skin Conditions | Microorganisms | 2021 | 216 |
| 26 | Towards an Ecological Understanding of Dinoflagellate Cyst Functions | Microorganisms | 2014 | 215 |
| 27 | Approaches to Dispersing Medical Biofilms | Microorganisms | 2017 | 212 |
| 28 | Biofilm Forming Lactobacillus: New Challenges for the Development of Probiotics | Microorganisms | 2016 | 210 |
| 29 | The Significance of Bacillus spp. in Disease Suppression and Growth Promotion of Field and Vegetable Crops | Microorganisms | 2020 | 206 |
| 30 | The Ever-Expanding Pseudomonas Genus: Description of 43 New Species and Partition of the Pseudomonas putida Group | Microorganisms | 2021 | 206 |
| 31 | Towards Advances in Medicinal Plant Antimicrobial Activity: A Review Study on Challenges and Future Perspectives | Microorganisms | 2021 | 206 |
| 32 | Microbiota, Gut Health and Chicken Productivity: What Is the Connection? | Microorganisms | 2019 | 205 |
| 33 | The Production and Delivery of Probiotics: A Review of a Practical Approach | Microorganisms | 2019 | 205 |
| 34 | The Science behind the Probiotic Strain Bifidobacterium animalis subsp. lactis BB-12® | Microorganisms | 2014 | 201 |
| 35 | A Review of Fish Vaccine Development Strategies: Conventional Methods and Modern Biotechnological Approaches | Microorganisms | 2019 | 196 |
| 36 | Potential Role for the Gut Microbiota in Modulating Host Circadian Rhythms and Metabolic Health | Microorganisms | 2019 | 191 |
| 37 | The Role of Gut Microbiota in Intestinal Inflammation with Respect to Diet and Extrinsic Stressors | Microorganisms | 2019 | 186 |
| 38 | Tocilizumab for Treatment of Severe COVID-19 Patients: Preliminary Results from SMAtteo COvid19 REgistry (SMACORE) | Microorganisms | 2020 | 186 |
| 39 | Hydrogen Sulfide in Physiology and Diseases of the Digestive Tract | Microorganisms | 2015 | 176 |
| 40 | Comparison of Yeasts as Hosts for Recombinant Protein Production | Microorganisms | 2018 | 175 |
| 41 | Global Burden of Colistin-Resistant Bacteria: Mobilized Colistin Resistance Genes Study (1980–2018) | Microorganisms | 2019 | 175 |
| 42 | Fungal and Bacterial Communities Exhibit Consistent Responses to Reversal of Soil Acidification and Phosphorus Limitation over Time | Microorganisms | 2020 | 165 |
| 43 | Combining Biocontrol Agents with Chemical Fungicides for Integrated Plant Fungal Disease Control | Microorganisms | 2020 | 164 |
| 44 | Malaria: The Past and the Present | Microorganisms | 2019 | 163 |
| 45 | Diversity and Control of Spoilage Fungi in Dairy Products: An Update | Microorganisms | 2017 | 155 |
| 46 | An Overview of Potential Oleaginous Microorganisms and Their Role in Biodiesel and Omega-3 Fatty Acid-Based Industries | Microorganisms | 2020 | 155 |
| 47 | Leaky Gut, Leaky Brain? | Microorganisms | 2018 | 153 |
| 48 | Metal Oxide Nanoparticles Against Bacterial Biofilms: Perspectives and Limitations | Microorganisms | 2020 | 150 |
| 49 | Microbial Surfactants: The Next Generation Multifunctional Biomolecules for Applications in the Petroleum Industry and Its Associated Environmental Remediation | Microorganisms | 2019 | 147 |
| 50 | Microbiome, Metabolome and Inflammatory Bowel Disease | Microorganisms | 2016 | 142 |
