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Top Articles

#TitleJournalYearCitations
1BEAST: Bayesian evolutionary analysis by sampling treesBMC Evolutionary Biology200711,072
2A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakesBMC Evolutionary Biology20131,252
3BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignmentsBMC Evolutionary Biology20101,153
4TREEFINDER: a powerful graphical analysis environment for molecular phylogeneticsBMC Evolutionary Biology2004978
5Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justifiedBMC Evolutionary Biology2006977
6Bayesian inference of population size history from multiple lociBMC Evolutionary Biology2008658
7Phylogenetic classification of bony fishesBMC Evolutionary Biology2017635
8BLAST-EXPLORER helps you building datasets for phylogenetic analysisBMC Evolutionary Biology2010633
9The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plantsBMC Evolutionary Biology2005632
10bModelTest: Bayesian phylogenetic site model averaging and model comparisonBMC Evolutionary Biology2017609
11Selecting optimal partitioning schemes for phylogenomic datasetsBMC Evolutionary Biology2014575
12Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous modelBMC Evolutionary Biology2007551
13A maximum pseudo-likelihood approach for estimating species trees under the coalescent modelBMC Evolutionary Biology2010548
14Cryptic animal species are homogeneously distributed among taxa and biogeographical regionsBMC Evolutionary Biology2007512
15A molecular timescale of eukaryote evolution and the rise of complex multicellular lifeBMC Evolutionary Biology2004497
16A genomic timescale of prokaryote evolution: insights into the origin of methanogenesis, phototrophy, and the colonization of landBMC Evolutionary Biology2004486
17From algae to angiosperms–inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomesBMC Evolutionary Biology2014468
18A phylogenetic framework for evolutionary study of the nightshades (Solanaceae): a dated 1000-tip treeBMC Evolutionary Biology2013451
19Phylogenetic estimation error can decrease the accuracy of species delimitation: a Bayesian implementation of the general mixed Yule-coalescent modelBMC Evolutionary Biology2012432
20A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysisBMC Evolutionary Biology2006428
21Insights on the evolution of trehalose biosynthesisBMC Evolutionary Biology2006391
22A glimpse on the pattern of rodent diversification: a phylogenetic approachBMC Evolutionary Biology2012390
23Evolution, substrate specificity and subfamily classification of glycoside hydrolase family 5 (GH5)BMC Evolutionary Biology2012389
24Evolution and expansion of the Mycobacterium tuberculosis PE and PPE multigene families and their association with the duplication of the ESAT-6 (esx) gene cluster regionsBMC Evolutionary Biology2006388
25Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plantsBMC Evolutionary Biology2015350
26Differential impact of simultaneous migration on coevolving hosts and parasitesBMC Evolutionary Biology2007348
27Dynamics and evolution of the inverted repeat-large single copy junctions in the chloroplast genomes of monocotsBMC Evolutionary Biology2008347
28Genome size differentiates co-occurring populations of the planktonic diatom Ditylum brightwellii(Bacillariophyta)BMC Evolutionary Biology2010340
29Thirteen Camelliachloroplast genome sequences determined by high-throughput sequencing: genome structure and phylogenetic relationshipsBMC Evolutionary Biology2014336
30A practical approach to phylogenomics: the phylogeny of ray-finned fish (Actinopterygii) as a case studyBMC Evolutionary Biology2007322
31A phylogeny and molecular barcodes for Caenorhabditis, with numerous new species from rotting fruitsBMC Evolutionary Biology2011317
32Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotesBMC Evolutionary Biology2003316
33Out of Tanganyika: genesis, explosive speciation, key-innovations and phylogeography of the haplochromine cichlid fishesBMC Evolutionary Biology2005313
34Phylogenomic reconstruction of lactic acid bacteria: an updateBMC Evolutionary Biology2011312
35Subfunctionalization of duplicated genes as a transition state to neofunctionalizationBMC Evolutionary Biology2005311
36Diversity begets diversity: host expansions and the diversification of plant-feeding insectsBMC Evolutionary Biology2006310
37PATRISTIC: a program for calculating patristic distances and graphically comparing the components of genetic changeBMC Evolutionary Biology2006309
38Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryzaand their phylogenetic utility across various taxonomic levelsBMC Evolutionary Biology2010304
39Phylogenetic analysis of condensation domains in NRPS sheds light on their functional evolutionBMC Evolutionary Biology2007301
40Molecular evolution of the reactive oxygen-generating NADPH oxidase (Nox/Duox) family of enzymesBMC Evolutionary Biology2007299
41Genome-wide comparative phylogenetic analysis of the rice and Arabidopsis Dof gene familiesBMC Evolutionary Biology2003295
42Codon usage bias and the evolution of influenza A viruses. Codon Usage Biases of Influenza VirusBMC Evolutionary Biology2010295
43A survey of nuclear ribosomal internal transcribed spacer substitution rates across angiosperms: an approximate molecular clock with life history effectsBMC Evolutionary Biology2006291
44New approaches for unravelling reassortment pathwaysBMC Evolutionary Biology2013278
45The taxonomy of Enterobacter sakazakii: proposal of a new genus Cronobacter gen. nov. and descriptions of Cronobacter sakazakii comb. nov. Cronobacter sakazakii subsp. sakazakii, comb. nov., Cronobacter sakazakii subsp. malonaticus subsp. nov., Cronobacter turicensis sp. nov., Cronobacter muytjensii sp. nov., Cronobacter dublinensis sp. nov. and Cronobacter genomospecies 1BMC Evolutionary Biology2007275
46Environmental variation and rivers govern the structure of chimpanzee genetic diversity in a biodiversity hotspotBMC Evolutionary Biology2015275
47Annelid phylogeny and the status of Sipuncula and EchiuraBMC Evolutionary Biology2007273
48Genome trees constructed using five different approaches suggest new major bacterial cladesBMC Evolutionary Biology2001272
49Origin of land plants: Do conjugating green algae hold the key?BMC Evolutionary Biology2011272
50Phylogenetic relationships within the speciose family Characidae (Teleostei: Ostariophysi: Characiformes) based on multilocus analysis and extensive ingroup samplingBMC Evolutionary Biology2011270