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Top Articles

#TitleJournalYearCitations
1BEAST: Bayesian evolutionary analysis by sampling treesBMC Evolutionary Biology200711,266
2A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakesBMC Evolutionary Biology20131,295
3BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignmentsBMC Evolutionary Biology20101,222
4Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justifiedBMC Evolutionary Biology2006984
5Phylogenetic classification of bony fishesBMC Evolutionary Biology2017699
6Bayesian inference of population size history from multiple lociBMC Evolutionary Biology2008681
7bModelTest: Bayesian phylogenetic site model averaging and model comparisonBMC Evolutionary Biology2017661
8The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plantsBMC Evolutionary Biology2005655
9BLAST-EXPLORER helps you building datasets for phylogenetic analysisBMC Evolutionary Biology2010649
10Selecting optimal partitioning schemes for phylogenomic datasetsBMC Evolutionary Biology2014602
11Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous modelBMC Evolutionary Biology2007571
12A maximum pseudo-likelihood approach for estimating species trees under the coalescent modelBMC Evolutionary Biology2010561
13Cryptic animal species are homogeneously distributed among taxa and biogeographical regionsBMC Evolutionary Biology2007532
14A molecular timescale of eukaryote evolution and the rise of complex multicellular lifeBMC Evolutionary Biology2004506
15A genomic timescale of prokaryote evolution: insights into the origin of methanogenesis, phototrophy, and the colonization of landBMC Evolutionary Biology2004501
16From algae to angiosperms–inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomesBMC Evolutionary Biology2014485
17A phylogenetic framework for evolutionary study of the nightshades (Solanaceae): a dated 1000-tip treeBMC Evolutionary Biology2013470
18Phylogenetic estimation error can decrease the accuracy of species delimitation: a Bayesian implementation of the general mixed Yule-coalescent modelBMC Evolutionary Biology2012459
19A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysisBMC Evolutionary Biology2006432
20Insights on the evolution of trehalose biosynthesisBMC Evolutionary Biology2006406
21A glimpse on the pattern of rodent diversification: a phylogenetic approachBMC Evolutionary Biology2012404
22Evolution, substrate specificity and subfamily classification of glycoside hydrolase family 5 (GH5)BMC Evolutionary Biology2012401
23Evolution and expansion of the Mycobacterium tuberculosis PE and PPE multigene families and their association with the duplication of the ESAT-6 (esx) gene cluster regionsBMC Evolutionary Biology2006395
24Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plantsBMC Evolutionary Biology2015380
25Dynamics and evolution of the inverted repeat-large single copy junctions in the chloroplast genomes of monocotsBMC Evolutionary Biology2008372
26Differential impact of simultaneous migration on coevolving hosts and parasitesBMC Evolutionary Biology2007360
27Thirteen Camelliachloroplast genome sequences determined by high-throughput sequencing: genome structure and phylogenetic relationshipsBMC Evolutionary Biology2014360
28Genome size differentiates co-occurring populations of the planktonic diatom Ditylum brightwellii(Bacillariophyta)BMC Evolutionary Biology2010343
29A practical approach to phylogenomics: the phylogeny of ray-finned fish (Actinopterygii) as a case studyBMC Evolutionary Biology2007324
30A phylogeny and molecular barcodes for Caenorhabditis, with numerous new species from rotting fruitsBMC Evolutionary Biology2011324
31Out of Tanganyika: genesis, explosive speciation, key-innovations and phylogeography of the haplochromine cichlid fishesBMC Evolutionary Biology2005322
32Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotesBMC Evolutionary Biology2003321
33Subfunctionalization of duplicated genes as a transition state to neofunctionalizationBMC Evolutionary Biology2005318
34PATRISTIC: a program for calculating patristic distances and graphically comparing the components of genetic changeBMC Evolutionary Biology2006317
35Phylogenomic reconstruction of lactic acid bacteria: an updateBMC Evolutionary Biology2011317
36Diversity begets diversity: host expansions and the diversification of plant-feeding insectsBMC Evolutionary Biology2006314
37Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryzaand their phylogenetic utility across various taxonomic levelsBMC Evolutionary Biology2010311
38Genome-wide comparative phylogenetic analysis of the rice and Arabidopsis Dof gene familiesBMC Evolutionary Biology2003308
39Molecular evolution of the reactive oxygen-generating NADPH oxidase (Nox/Duox) family of enzymesBMC Evolutionary Biology2007305
40Phylogenetic analysis of condensation domains in NRPS sheds light on their functional evolutionBMC Evolutionary Biology2007305
41Codon usage bias and the evolution of influenza A viruses. Codon Usage Biases of Influenza VirusBMC Evolutionary Biology2010302
42A survey of nuclear ribosomal internal transcribed spacer substitution rates across angiosperms: an approximate molecular clock with life history effectsBMC Evolutionary Biology2006293
43Annelid phylogeny and the status of Sipuncula and EchiuraBMC Evolutionary Biology2007289
44Origin of land plants: Do conjugating green algae hold the key?BMC Evolutionary Biology2011283
45The taxonomy of Enterobacter sakazakii: proposal of a new genus Cronobacter gen. nov. and descriptions of Cronobacter sakazakii comb. nov. Cronobacter sakazakii subsp. sakazakii, comb. nov., Cronobacter sakazakii subsp. malonaticus subsp. nov., Cronobacter turicensis sp. nov., Cronobacter muytjensii sp. nov., Cronobacter dublinensis sp. nov. and Cronobacter genomospecies 1BMC Evolutionary Biology2007282
46New approaches for unravelling reassortment pathwaysBMC Evolutionary Biology2013281
47Environmental variation and rivers govern the structure of chimpanzee genetic diversity in a biodiversity hotspotBMC Evolutionary Biology2015278
48Complete chloroplast genome of the genus Cymbidium: lights into the species identification, phylogenetic implications and population genetic analysesBMC Evolutionary Biology2013277
49Heterotachy and long-branch attraction in phylogeneticsBMC Evolutionary Biology2005276
50Phylogenetic relationships within the speciose family Characidae (Teleostei: Ostariophysi: Characiformes) based on multilocus analysis and extensive ingroup samplingBMC Evolutionary Biology2011276