# | Title | Journal | Year | Citations |
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1 | The RAST Server: Rapid Annotations using Subsystems Technology | BMC Genomics | 2008 | 9,977 |
2 | BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons | BMC Genomics | 2011 | 2,691 |
3 | The advantages of the Matthews correlation coefficient (MCC) over F1 score and accuracy in binary classification evaluation | BMC Genomics | 2020 | 2,549 |
4 | Centering, scaling, and transformations: improving the biological information content of metabolomics data | BMC Genomics | 2006 | 1,836 |
5 | A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers | BMC Genomics | 2012 | 1,601 |
6 | Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics | BMC Genomics | 2018 | 1,562 |
7 | Uncovering the novel characteristics of Asian honey bee, Apis cerana, by whole genome sequencing | BMC Genomics | 2015 | 1,445 |
8 | BioVenn – a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams | BMC Genomics | 2008 | 1,371 |
9 | A genome-wide association study of seed protein and oil content in soybean | BMC Genomics | 2014 | 1,312 |
10 | The molecular portraits of breast tumors are conserved across microarray platforms | BMC Genomics | 2006 | 1,169 |
11 | The complex transcriptional landscape of the anucleate human platelet | BMC Genomics | 2013 | 913 |
12 | Characterization of microRNA expression profiles in normal human tissues | BMC Genomics | 2007 | 902 |
13 | Characterization of human plasma-derived exosomal RNAs by deep sequencing | BMC Genomics | 2013 | 860 |
14 | A data-driven approach to preprocessing Illumina 450K methylation array data | BMC Genomics | 2013 | 850 |
15 | A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains | BMC Genomics | 2007 | 836 |
16 | LEA (Late Embryogenesis Abundant) proteins and their encoding genes in Arabidopsis thaliana | BMC Genomics | 2008 | 818 |
17 | Optimizing illumina next-generation sequencing library preparation for extremely at-biased genomes | BMC Genomics | 2012 | 772 |
18 | ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases | BMC Genomics | 2014 | 771 |
19 | A new approach for efficient genotype imputation using information from relatives | BMC Genomics | 2014 | 760 |
20 | Locating rearrangement events in a phylogeny based on highly fragmented assemblies | BMC Genomics | 2016 | 740 |
21 | BioMart – biological queries made easy | BMC Genomics | 2009 | 738 |
22 | Comparative genome and phenotypic analysis of three Clostridioides difficile strains isolated from a single patient provide insight into multiple infection of C. difficile | BMC Genomics | 2018 | 725 |
23 | Genome-wide SNP discovery and QTL mapping for fruit quality traits in inbred backcross lines (IBLs) of solanum pimpinellifolium using genotyping by sequencing | BMC Genomics | 2017 | 690 |
24 | Genome-wide association study reveals novel loci associated with body size and carcass yields in Pekin ducks | BMC Genomics | 2019 | 689 |
25 | WebMGA: a customizable web server for fast metagenomic sequence analysis | BMC Genomics | 2011 | 641 |
26 | Gene networks driving bovine milk fat synthesis during the lactation cycle | BMC Genomics | 2008 | 626 |
27 | Genome-wide analysis of the interaction between the endosymbiotic bacterium Wolbachia and its Drosophila host | BMC Genomics | 2008 | 622 |
28 | Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential | BMC Genomics | 2015 | 587 |
29 | Development and implementation of high-throughput SNP genotyping in barley | BMC Genomics | 2009 | 570 |
30 | CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences | BMC Genomics | 2012 | 569 |
31 | MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress | BMC Genomics | 2007 | 545 |
32 | A universal DNA mini-barcode for biodiversity analysis | BMC Genomics | 2008 | 535 |
33 | Transcriptional profiling of Arabidopsis heat shock proteins and transcription factors reveals extensive overlap between heat and non-heat stress response pathways | BMC Genomics | 2007 | 515 |
34 | CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers | BMC Genomics | 2015 | 514 |
35 | Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources? | BMC Genomics | 2009 | 502 |
36 | Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications | BMC Genomics | 2008 | 490 |
37 | The unfoldomics decade: an update on intrinsically disordered proteins | BMC Genomics | 2008 | 485 |
38 | Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners | BMC Genomics | 2008 | 482 |
39 | Microarray analysis after RNA amplification can detect pronounced differences in gene expression using limma | BMC Genomics | 2006 | 480 |
40 | Better prediction of functional effects for sequence variants | BMC Genomics | 2015 | 478 |
41 | Adaptation of Hansenula polymorpha to methanol: a transcriptome analysis | BMC Genomics | 2010 | 477 |
42 | Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi | BMC Genomics | 2013 | 473 |
43 | A first-generation microsatellite-based genetic linkage map of the Siberian jay (Perisoreus infaustus): insights into avian genome evolution | BMC Genomics | 2009 | 458 |
44 | Genome-wide classification and expression analysis of MYB transcription factor families in rice and Arabidopsis | BMC Genomics | 2012 | 450 |
45 | Alpha-gliadin genes from the A, B, and D genomes of wheat contain different sets of celiac disease epitopes | BMC Genomics | 2006 | 445 |
46 | Selective extracellular vesicle-mediated export of an overlapping set of microRNAs from multiple cell types | BMC Genomics | 2012 | 445 |
47 | Protein kinases of the human malaria parasite Plasmodium falciparum: the kinome of a divergent eukaryote | BMC Genomics | 2004 | 440 |
48 | Protein abundance profiling of the Escherichia coli cytosol | BMC Genomics | 2008 | 432 |
49 | Converting a breast cancer microarray signature into a high-throughput diagnostic test | BMC Genomics | 2006 | 429 |
50 | BayesHammer: Bayesian clustering for error correction in single-cell sequencing | BMC Genomics | 2013 | 429 |