| 1 | The RAST Server: Rapid Annotations using Subsystems Technology | BMC Genomics | 2008 | 11,331 |
| 2 | The advantages of the Matthews correlation coefficient (MCC) over F1 score and accuracy in binary classification evaluation | BMC Genomics | 2020 | 4,408 |
| 3 | BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons | BMC Genomics | 2011 | 3,246 |
| 4 | Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics | BMC Genomics | 2018 | 2,654 |
| 5 | Centering, scaling, and transformations: improving the biological information content of metabolomics data | BMC Genomics | 2006 | 2,077 |
| 6 | A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers | BMC Genomics | 2012 | 1,726 |
| 7 | Uncovering the novel characteristics of Asian honey bee, Apis cerana, by whole genome sequencing | BMC Genomics | 2015 | 1,640 |
| 8 | BioVenn – a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams | BMC Genomics | 2008 | 1,623 |
| 9 | A genome-wide association study of seed protein and oil content in soybean | BMC Genomics | 2014 | 1,361 |
| 10 | The molecular portraits of breast tumors are conserved across microarray platforms | BMC Genomics | 2006 | 1,211 |
| 11 | A data-driven approach to preprocessing Illumina 450K methylation array data | BMC Genomics | 2013 | 1,027 |
| 12 | The complex transcriptional landscape of the anucleate human platelet | BMC Genomics | 2013 | 1,025 |
| 13 | Characterization of human plasma-derived exosomal RNAs by deep sequencing | BMC Genomics | 2013 | 969 |
| 14 | Characterization of microRNA expression profiles in normal human tissues | BMC Genomics | 2007 | 948 |
| 15 | LEA (Late Embryogenesis Abundant) proteins and their encoding genes in Arabidopsis thaliana | BMC Genomics | 2008 | 945 |
| 16 | BioMart – biological queries made easy | BMC Genomics | 2009 | 938 |
| 17 | A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains | BMC Genomics | 2007 | 921 |
| 18 | Comparative genome and phenotypic analysis of three Clostridioides difficile strains isolated from a single patient provide insight into multiple infection of C. difficile | BMC Genomics | 2018 | 893 |
| 19 | A new approach for efficient genotype imputation using information from relatives | BMC Genomics | 2014 | 891 |
| 20 | Optimizing illumina next-generation sequencing library preparation for extremely at-biased genomes | BMC Genomics | 2012 | 856 |
| 21 | ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases | BMC Genomics | 2014 | 853 |
| 22 | Locating rearrangement events in a phylogeny based on highly fragmented assemblies | BMC Genomics | 2016 | 853 |
| 23 | Genome-wide association study reveals novel loci associated with body size and carcass yields in Pekin ducks | BMC Genomics | 2019 | 765 |
| 24 | Genome-wide SNP discovery and QTL mapping for fruit quality traits in inbred backcross lines (IBLs) of solanum pimpinellifolium using genotyping by sequencing | BMC Genomics | 2017 | 745 |
| 25 | Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential | BMC Genomics | 2015 | 729 |
| 26 | Gene networks driving bovine milk fat synthesis during the lactation cycle | BMC Genomics | 2008 | 705 |
| 27 | Genome-wide analysis of the interaction between the endosymbiotic bacterium Wolbachia and its Drosophila host | BMC Genomics | 2008 | 695 |
| 28 | WebMGA: a customizable web server for fast metagenomic sequence analysis | BMC Genomics | 2011 | 661 |
| 29 | MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress | BMC Genomics | 2007 | 627 |
| 30 | CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences | BMC Genomics | 2012 | 627 |
| 31 | CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers | BMC Genomics | 2015 | 608 |
| 32 | A universal DNA mini-barcode for biodiversity analysis | BMC Genomics | 2008 | 594 |
| 33 | Development and implementation of high-throughput SNP genotyping in barley | BMC Genomics | 2009 | 591 |
| 34 | Better prediction of functional effects for sequence variants | BMC Genomics | 2015 | 579 |
| 35 | Transcriptional profiling of Arabidopsis heat shock proteins and transcription factors reveals extensive overlap between heat and non-heat stress response pathways | BMC Genomics | 2007 | 573 |
| 36 | Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources? | BMC Genomics | 2009 | 564 |
| 37 | Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications | BMC Genomics | 2008 | 554 |
| 38 | Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi | BMC Genomics | 2013 | 551 |
| 39 | Genome-wide classification and expression analysis of MYB transcription factor families in rice and Arabidopsis | BMC Genomics | 2012 | 550 |
| 40 | Adaptation of Hansenula polymorpha to methanol: a transcriptome analysis | BMC Genomics | 2010 | 535 |
| 41 | Microarray analysis after RNA amplification can detect pronounced differences in gene expression using limma | BMC Genomics | 2006 | 523 |
| 42 | The unfoldomics decade: an update on intrinsically disordered proteins | BMC Genomics | 2008 | 520 |
| 43 | Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners | BMC Genomics | 2008 | 519 |
| 44 | A first-generation microsatellite-based genetic linkage map of the Siberian jay (Perisoreus infaustus): insights into avian genome evolution | BMC Genomics | 2009 | 505 |
| 45 | Selective extracellular vesicle-mediated export of an overlapping set of microRNAs from multiple cell types | BMC Genomics | 2012 | 503 |
| 46 | RegPrecise 3.0 – A resource for genome-scale exploration of transcriptional regulation in bacteria | BMC Genomics | 2013 | 498 |
| 47 | Correlations between RNA and protein expression profiles in 23 human cell lines | BMC Genomics | 2009 | 483 |
| 48 | H3K9 and H3K14 acetylation co-occur at many gene regulatory elements, while H3K14ac marks a subset of inactive inducible promoters in mouse embryonic stem cells | BMC Genomics | 2012 | 479 |
| 49 | Alpha-gliadin genes from the A, B, and D genomes of wheat contain different sets of celiac disease epitopes | BMC Genomics | 2006 | 474 |
| 50 | SNPhylo: a pipeline to construct a phylogenetic tree from huge SNP data | BMC Genomics | 2014 | 472 |