NIH Image to ImageJ: 25 years of image analysis | Nature Methods | 2012 | 31.5K |
Fiji: an open-source platform for biological-image analysis | Nature Methods | 2012 | 27.8K |
Fast gapped-read alignment with Bowtie 2 | Nature Methods | 2012 | 24.7K |
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing | Journal of Computational Biology | 2012 | 12K |
Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data | Bioinformatics | 2012 | 11.3K |
jModelTest 2: more models, new heuristics and parallel computing | Nature Methods | 2012 | 10K |
clusterProfiler: an R package for comparing biological themes among gene clusters | OMICS A Journal of Integrative Biology | 2012 | 9.1K |
GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update | Bioinformatics | 2012 | 8.4K |
Bayesian phylogenetics with BEAUti and the BEAST 1.7 | Molecular Biology and Evolution | 2012 | 7.4K |
Partitionfinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses | Molecular Biology and Evolution | 2012 | 4.1K |
CD-HIT: accelerated for clustering the next-generation sequencing data | Bioinformatics | 2012 | 3.8K |
Functions of DNA methylation: islands, start sites, gene bodies and beyond | Nature Reviews Genetics | 2012 | 3.7K |
Primer-BLAST: a tool to design target-specific primers for polymerase chain reaction | BMC Bioinformatics | 2012 | 3K |
Guidelines for the use and interpretation of assays for monitoring autophagy | Autophagy | 2012 | 2.8K |
AMPK: a nutrient and energy sensor that maintains energy homeostasis | Nature Reviews Molecular Cell Biology | 2012 | 2.7K |
Insights into the regulation of protein abundance from proteomic and transcriptomic analyses | Nature Reviews Genetics | 2012 | 2.4K |
The unfolded protein response: controlling cell fate decisions under ER stress and beyond | Nature Reviews Molecular Cell Biology | 2012 | 2.3K |
TGFβ signalling in context | Nature Reviews Molecular Cell Biology | 2012 | 2K |
SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes | Bioinformatics | 2012 | 2K |
The human microbiome: at the interface of health and disease | Nature Reviews Genetics | 2012 | 2K |
The sva package for removing batch effects and other unwanted variation in high-throughput experiments | Bioinformatics | 2012 | 2K |
The Top 10 fungal pathogens in molecular plant pathology | Molecular Plant Pathology | 2012 | 2K |
Molecular definitions of cell death subroutines: recommendations of the Nomenclature Committee on Cell Death 2012 | Cell Death and Differentiation | 2012 | 1.8K |
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth | Bioinformatics | 2012 | 1.8K |
DNA methylation arrays as surrogate measures of cell mixture distribution | BMC Bioinformatics | 2012 | 1.8K |