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#TitleJournalYearCitations
1Electron transfer by domain movement in cytochrome bc1Nature19981,083
2Dynamical networks in tRNA:protein complexesProceedings of the National Academy of Sciences of the United States of America2009685
3Advances in Single-Molecule Fluorescence Methods for Molecular BiologyAnnual Review of Biochemistry2008673
4High-Efficiency Multiplex Genome Editing of Streptomyces Species Using an Engineered CRISPR/Cas SystemACS Synthetic Biology2015473
5Amphotericin forms an extramembranous and fungicidal sterol spongeNature Chemical Biology2014359
6Ab Initio Molecular Dynamics and Time-Resolved Photoelectron Spectroscopy of Electronically Excited Uracil and ThymineJournal of Physical Chemistry A2007355
7MultiSeq: unifying sequence and structure data for evolutionary analysisBMC Bioinformatics2006345
8Ten-Microsecond Molecular Dynamics Simulation of a Fast-Folding WW DomainBiophysical Journal2008309
9Discovery Through the Computational MicroscopeStructure2009302
10Water−Silica Force Field for Simulating NanodevicesJournal of Physical Chemistry B2006283
11Structure and Mechanism of the Lantibiotic Cyclase Involved in Nisin BiosynthesisScience2006275
12Molecular diagnostic and drug delivery agents based on aptamer-nanomaterial conjugatesAdvanced Drug Delivery Reviews2010268
13Asymmetric Unwrapping of Nucleosomes under Tension Directed by DNA Local FlexibilityCell2015261
14Proton-Detected Solid-State NMR Spectroscopy of Fully Protonated Proteins at 40 kHz Magic-Angle SpinningJournal of the American Chemical Society2007256
15Genome-Wide Analyses Reveal a Role for Peptide Hormones in Planarian Germline DevelopmentPLoS Biology2010249
16Stability and Dynamics of Virus Capsids Described by Coarse-Grained ModelingStructure2006245
17Coarse Grained Protein−Lipid Model with Application to Lipoprotein Particles†Journal of Physical Chemistry B2006244
18Genome of the Epsilonproteobacterial Chemolithoautotroph Sulfurimonas denitrificansApplied and Environmental Microbiology2008228
19Quantitative Analysis of Modified Proteins and Their Positional Isomers by Tandem Mass Spectrometry:  Human Histone H4Analytical Chemistry2006223
20Defocused orientation and position imaging (DOPI) of myosin VProceedings of the National Academy of Sciences of the United States of America2006217
21Pervasive combinatorial modification of histone H3 in human cellsNature Methods2007217
22Titration of aspartate-85 in bacteriorhodopsin: what it says about chromophore isomerization and proton releaseBiophysical Journal1996216
23CHARMM-GUI PDB Manipulator for Advanced Modeling and Simulations of Proteins Containing Nonstandard ResiduesAdvances in Protein Chemistry and Structural Biology2014214
24Multiple intermediates in SNARE-induced membrane fusionProceedings of the National Academy of Sciences of the United States of America2006207
25Molecular dynamics simulations of membrane channels and transportersCurrent Opinion in Structural Biology2009201
26Force Field Bias in Protein Folding SimulationsBiophysical Journal2009185
27Bisphosphonates target multiple sites in both cis- and trans-prenyltransferasesProceedings of the National Academy of Sciences of the United States of America2007173
28Single-molecule pull-down for studying protein interactionsNature Protocols2012172
29MRI Detection of Thrombin with Aptamer Functionalized Superparamagnetic Iron Oxide NanoparticlesBioconjugate Chemistry2008170
30Combinatorial Modification of Human Histone H4 Quantitated by Two-dimensional Liquid Chromatography Coupled with Top Down Mass SpectrometryJournal of Biological Chemistry2008164
31Protonation reactions and their coupling in bacteriorhodopsinBiochimica Et Biophysica Acta - Bioenergetics2000162
32Direct molecular force measurements of multiple adhesive interactions between cadherin ectodomainsProceedings of the National Academy of Sciences of the United States of America1999160
33Fueling protein DNA interactions inside porous nanocontainersProceedings of the National Academy of Sciences of the United States of America2007159
34How Quantum Coherence Assists Photosynthetic Light-HarvestingJournal of Physical Chemistry Letters2012157
35Open Quantum Dynamics Calculations with the Hierarchy Equations of Motion on Parallel ComputersJournal of Chemical Theory and Computation2012157
36PcrA Helicase Dismantles RecA Filaments by Reeling in DNA in Uniform StepsCell2010156
37Behavior-specific changes in transcriptional modules lead to distinct and predictable neurogenomic statesProceedings of the National Academy of Sciences of the United States of America2011156
38Glutamate-194 to Cysteine Mutation Inhibits Fast Light-Induced Proton Release in Bacteriorhodopsin†Biochemistry1997155
39One influenza virus particle packages eight unique viral RNAs as shown by FISH analysisProceedings of the National Academy of Sciences of the United States of America2012150
40Single‐Molecule Four‐Color FRETAngewandte Chemie - International Edition2010148
41Characterizing the Membrane-Bound State of Cytochrome P450 3A4: Structure, Depth of Insertion, and OrientationJournal of the American Chemical Society2013143
42Excited‐State Dynamics of Cytosine Reveal Multiple Intrinsic Subpicosecond PathwaysChemPhysChem2008142
43Förster Energy Transfer Theory as Reflected in the Structures of Photosynthetic Light‐Harvesting SystemsChemPhysChem2011142
44Common Structural Transitions in Explicit-Solvent Simulations of Villin Headpiece FoldingBiophysical Journal2009141
45Dynamic Visualization of α-Catenin Reveals Rapid, Reversible Conformation Switching between Tension StatesCurrent Biology2015141
46Structured Regions of α-Synuclein Fibrils Include the Early-Onset Parkinson's Disease Mutation SitesJournal of Molecular Biology2011140
47Mechanistic picture for conformational transition of a membrane transporter at atomic resolutionProceedings of the National Academy of Sciences of the United States of America2013140
48An experimental survey of the transition between two-state and downhill protein folding scenariosProceedings of the National Academy of Sciences of the United States of America2008137
49Parallel Generalized Born Implicit Solvent Calculations with NAMDJournal of Chemical Theory and Computation2011137
50Protein Stability and Folding Kinetics in the Nucleus and Endoplasmic Reticulum of Eucaryotic CellsBiophysical Journal2011136