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Center for Biophysics and Computational Biology
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top-articles
Center for Biophysics and Computational Biology
443
(top 1%)
papers
25.3K
(top 1%)
citations
88
(top 0.1%)
h
-index
139
(top 1%)
g
-index
510
all documents
27.1K
doc citations
2.4K
citing journals
Top Articles
#
Title
Journal
Year
Citations
1
Electron transfer by domain movement in cytochrome bc1
Nature
1998
1,083
2
Dynamical networks in tRNA:protein complexes
Proceedings of the National Academy of Sciences of the United States of America
2009
685
3
Advances in Single-Molecule Fluorescence Methods for Molecular Biology
Annual Review of Biochemistry
2008
673
4
High-Efficiency Multiplex Genome Editing of
Streptomyces
Species Using an Engineered CRISPR/Cas System
ACS Synthetic Biology
2015
473
5
Amphotericin forms an extramembranous and fungicidal sterol sponge
Nature Chemical Biology
2014
359
6
Ab Initio Molecular Dynamics and Time-Resolved Photoelectron Spectroscopy of Electronically Excited Uracil and Thymine
Journal of Physical Chemistry A
2007
355
7
MultiSeq: unifying sequence and structure data for evolutionary analysis
BMC Bioinformatics
2006
345
8
Ten-Microsecond Molecular Dynamics Simulation of a Fast-Folding WW Domain
Biophysical Journal
2008
309
9
Discovery Through the Computational Microscope
Structure
2009
302
10
Water−Silica Force Field for Simulating Nanodevices
Journal of Physical Chemistry B
2006
283
11
Structure and Mechanism of the Lantibiotic Cyclase Involved in Nisin Biosynthesis
Science
2006
275
12
Molecular diagnostic and drug delivery agents based on aptamer-nanomaterial conjugates
Advanced Drug Delivery Reviews
2010
268
13
Asymmetric Unwrapping of Nucleosomes under Tension Directed by DNA Local Flexibility
Cell
2015
261
14
Proton-Detected Solid-State NMR Spectroscopy of Fully Protonated Proteins at 40 kHz Magic-Angle Spinning
Journal of the American Chemical Society
2007
256
15
Genome-Wide Analyses Reveal a Role for Peptide Hormones in Planarian Germline Development
PLoS Biology
2010
249
16
Stability and Dynamics of Virus Capsids Described by Coarse-Grained Modeling
Structure
2006
245
17
Coarse Grained Protein−Lipid Model with Application to Lipoprotein Particles†
Journal of Physical Chemistry B
2006
244
18
Genome of the Epsilonproteobacterial Chemolithoautotroph
Sulfurimonas denitrificans
Applied and Environmental Microbiology
2008
228
19
Quantitative Analysis of Modified Proteins and Their Positional Isomers by Tandem Mass Spectrometry: Human Histone H4
Analytical Chemistry
2006
223
20
Defocused orientation and position imaging (DOPI) of myosin V
Proceedings of the National Academy of Sciences of the United States of America
2006
217
21
Pervasive combinatorial modification of histone H3 in human cells
Nature Methods
2007
217
22
Titration of aspartate-85 in bacteriorhodopsin: what it says about chromophore isomerization and proton release
Biophysical Journal
1996
216
23
CHARMM-GUI PDB Manipulator for Advanced Modeling and Simulations of Proteins Containing Nonstandard Residues
Advances in Protein Chemistry and Structural Biology
2014
214
24
Multiple intermediates in SNARE-induced membrane fusion
Proceedings of the National Academy of Sciences of the United States of America
2006
207
25
Molecular dynamics simulations of membrane channels and transporters
Current Opinion in Structural Biology
2009
201
26
Force Field Bias in Protein Folding Simulations
Biophysical Journal
2009
185
27
Bisphosphonates target multiple sites in both cis- and trans-prenyltransferases
Proceedings of the National Academy of Sciences of the United States of America
2007
173
28
Single-molecule pull-down for studying protein interactions
Nature Protocols
2012
172
29
MRI Detection of Thrombin with Aptamer Functionalized Superparamagnetic Iron Oxide Nanoparticles
Bioconjugate Chemistry
2008
170
30
Combinatorial Modification of Human Histone H4 Quantitated by Two-dimensional Liquid Chromatography Coupled with Top Down Mass Spectrometry
Journal of Biological Chemistry
2008
164
31
Protonation reactions and their coupling in bacteriorhodopsin
Biochimica Et Biophysica Acta - Bioenergetics
2000
162
32
Direct molecular force measurements of multiple adhesive interactions between cadherin ectodomains
Proceedings of the National Academy of Sciences of the United States of America
1999
160
33
Fueling protein DNA interactions inside porous nanocontainers
Proceedings of the National Academy of Sciences of the United States of America
2007
159
34
How Quantum Coherence Assists Photosynthetic Light-Harvesting
Journal of Physical Chemistry Letters
2012
157
35
Open Quantum Dynamics Calculations with the Hierarchy Equations of Motion on Parallel Computers
Journal of Chemical Theory and Computation
2012
157
36
PcrA Helicase Dismantles RecA Filaments by Reeling in DNA in Uniform Steps
Cell
2010
156
37
Behavior-specific changes in transcriptional modules lead to distinct and predictable neurogenomic states
Proceedings of the National Academy of Sciences of the United States of America
2011
156
38
Glutamate-194 to Cysteine Mutation Inhibits Fast Light-Induced Proton Release in Bacteriorhodopsin†
Biochemistry
1997
155
39
One influenza virus particle packages eight unique viral RNAs as shown by FISH analysis
Proceedings of the National Academy of Sciences of the United States of America
2012
150
40
Single‐Molecule Four‐Color FRET
Angewandte Chemie - International Edition
2010
148
41
Characterizing the Membrane-Bound State of Cytochrome P450 3A4: Structure, Depth of Insertion, and Orientation
Journal of the American Chemical Society
2013
143
42
Excited‐State Dynamics of Cytosine Reveal Multiple Intrinsic Subpicosecond Pathways
ChemPhysChem
2008
142
43
Förster Energy Transfer Theory as Reflected in the Structures of Photosynthetic Light‐Harvesting Systems
ChemPhysChem
2011
142
44
Common Structural Transitions in Explicit-Solvent Simulations of Villin Headpiece Folding
Biophysical Journal
2009
141
45
Dynamic Visualization of α-Catenin Reveals Rapid, Reversible Conformation Switching between Tension States
Current Biology
2015
141
46
Structured Regions of α-Synuclein Fibrils Include the Early-Onset Parkinson's Disease Mutation Sites
Journal of Molecular Biology
2011
140
47
Mechanistic picture for conformational transition of a membrane transporter at atomic resolution
Proceedings of the National Academy of Sciences of the United States of America
2013
140
48
An experimental survey of the transition between two-state and downhill protein folding scenarios
Proceedings of the National Academy of Sciences of the United States of America
2008
137
49
Parallel Generalized Born Implicit Solvent Calculations with NAMD
Journal of Chemical Theory and Computation
2011
137
50
Protein Stability and Folding Kinetics in the Nucleus and Endoplasmic Reticulum of Eucaryotic Cells
Biophysical Journal
2011
136
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