| # | Title | Journal | Year | Citations |
|---|
| 1 | Scalable molecular dynamics with NAMD | Journal of Computational Chemistry | 2005 | 15,208 |
| 2 | Graph drawing by force-directed placement | Software - Practice and Experience | 1991 | 4,034 |
| 3 | Graph Regularized Nonnegative Matrix Factorization for Data Representation | IEEE Transactions on Pattern Analysis and Machine Intelligence | 2011 | 1,666 |
| 4 | A Practical Approach to Feature Selection | | 1992 | 1,643 |
| 5 | Iterative Quantization: A Procrustean Approach to Learning Binary Codes for Large-Scale Image Retrieval | IEEE Transactions on Pattern Analysis and Machine Intelligence | 2013 | 1,388 |
| 6 | A Comprehensive Survey of Graph Embedding: Problems, Techniques, and Applications | IEEE Transactions on Knowledge and Data Engineering | 2018 | 1,233 |
| 7 | From image descriptions to visual denotations: New similarity metrics for semantic inference over event descriptions | Transactions of the Association for Computational Linguistics | 2014 | 1,181 |
| 8 | Topological Persistence and Simplification | Discrete and Computational Geometry | 2002 | 1,065 |
| 9 | Algorithms in Combinatorial Geometry | | 1987 | 1,003 |
| 10 | Big Data: Astronomical or Genomical? | PLoS Biology | 2015 | 995 |
| 11 | Langevin stabilization of molecular dynamics | Journal of Chemical Physics | 2001 | 814 |
| 12 | Learning to detect objects in images via a sparse, part-based representation | IEEE Transactions on Pattern Analysis and Machine Intelligence | 2004 | 668 |
| 13 | Termination of rewriting | Journal of Symbolic Computation | 1987 | 584 |
| 14 | Advances in Computer Vision-Based Civil Infrastructure Inspection and Monitoring | Engineering | 2019 | 575 |
| 15 | A network integration approach for drug-target interaction prediction and computational drug repositioning from heterogeneous information | Nature Communications | 2017 | 543 |
| 16 | MRIQC: Advancing the automatic prediction of image quality in MRI from unseen sites | PLoS ONE | 2017 | 538 |
| 17 | Genome-wide Analyses Identify KIF5A as a Novel ALS Gene | Neuron | 2018 | 517 |
| 18 | Entity Linking with a Knowledge Base: Issues, Techniques, and Solutions | IEEE Transactions on Knowledge and Data Engineering | 2015 | 473 |
| 19 | Orderings for term-rewriting systems | Theoretical Computer Science | 1982 | 471 |
| 20 | Matching events in a content-based subscription system | | 1999 | 450 |
| 21 | A Multi-View Embedding Space for Modeling Internet Images, Tags, and Their Semantics | International Journal of Computer Vision | 2014 | 439 |
| 22 | Protein Secondary Structure Prediction Using Deep Convolutional Neural Fields | Scientific Reports | 2016 | 396 |
| 23 | Visual monitoring of civil infrastructure systems via camera-equipped Unmanned Aerial Vehicles (UAVs): a review of related works | Visualization in Engineering | 2016 | 342 |
| 24 | 3D Object Modeling and Recognition Using Local Affine-Invariant Image Descriptors and Multi-View Spatial Constraints | International Journal of Computer Vision | 2006 | 335 |
| 25 | Learning to match ontologies on the Semantic Web | VLDB Journal | 2003 | 334 |
| 26 | Joint Optimization of Masks and Deep Recurrent Neural Networks for Monaural Source Separation | IEEE/ACM Transactions on Audio Speech and Language Processing | 2015 | 332 |
| 27 | Functional CpG Methylation System in a Social Insect | Science | 2006 | 331 |
| 28 | Supervised and Unsupervised Speech Enhancement Using Nonnegative Matrix Factorization | IEEE Transactions on Audio Speech and Language Processing | 2013 | 319 |
| 29 | Leginon: An Automated System for Acquisition of Images from Vitreous Ice Specimens | Journal of Structural Biology | 2000 | 310 |
| 30 | Locally Consistent Concept Factorization for Document Clustering | IEEE Transactions on Knowledge and Data Engineering | 2011 | 290 |
| 31 | A unified approach to visibility representations of planar graphs | Discrete and Computational Geometry | 1986 | 289 |
| 32 | PDA: Privacy-Preserving Data Aggregation in Wireless Sensor Networks | | 2007 | 289 |
| 33 | Branch-and-bound algorithms: A survey of recent advances in searching, branching, and pruning | Discrete Optimization | 2016 | 287 |
| 34 | An overview of the K semantic framework | The Journal of Logic and Algebraic Programming | 2010 | 282 |
| 35 | Contention-aware admission control for ad hoc networks | IEEE Transactions on Mobile Computing | 2005 | 281 |
| 36 | Deep learning for monaural speech separation | | 2014 | 281 |
| 37 | Combinatorial complexity bounds for arrangements of curves and spheres | Discrete and Computational Geometry | 1990 | 275 |
| 38 | Skin-interfaced biosensors for advanced wireless physiological monitoring in neonatal and pediatric intensive-care units | Nature Medicine | 2020 | 272 |
| 39 | Multigrid solution of the Poisson?Boltzmann equation | Journal of Computational Chemistry | 1993 | 267 |
| 40 | Parallel recombinative simulated annealing: A genetic algorithm | Parallel Computing | 1995 | 261 |
| 41 | Analytical shape computation of macromolecules: I. molecular area and volume through alpha shape | Proteins: Structure, Function and Bioinformatics | 1998 | 258 |
| 42 | An infrastructure for context-awareness based on first order logic | Personal and Ubiquitous Computing | 2003 | 249 |
| 43 | The union of balls and its dual shape | Discrete and Computational Geometry | 1995 | 247 |
| 44 | Incremental topological flipping works for regular triangulations | Algorithmica | 1996 | 246 |
| 45 | Latent roots of random data correlation matrices with squared multiple correlations on the diagonal: A monte carlo study | Psychometrika | 1976 | 245 |
| 46 | High performance messaging on workstations | | 1995 | 241 |
| 47 | Discriminative Latent Models for Recognizing Contextual Group Activities | IEEE Transactions on Pattern Analysis and Machine Intelligence | 2012 | 231 |
| 48 | Opportunities and challenges of deep learning methods for electrocardiogram data: A systematic review | Computers in Biology and Medicine | 2020 | 228 |
| 49 | Numerical solution of the nonlinear Poisson-Boltzmann equation: Developing more robust and efficient methods | Journal of Computational Chemistry | 1995 | 225 |
| 50 | Multirate linear multistep methods | BIT Numerical Mathematics | 1984 | 221 |
