| # | Title | Journal | Year | Citations |
|---|
| 1 | A Modified Bootscan Algorithm for Automated Identification of Recombinant Sequences and Recombination Breakpoints | AIDS Research and Human Retroviruses | 2005 | 746 |
| 2 | Determinants of nucleosome organization in primary human cells | Nature | 2011 | 567 |
| 3 | The causes and consequences of HIV evolution | Nature Reviews Genetics | 2004 | 444 |
| 4 | A Broadly Implementable Research Course in Phage Discovery and Genomics for First-Year Undergraduate Students | MBio | 2014 | 424 |
| 5 | Influences on Attitudes Regarding Potential COVID-19 Vaccination in the United States | Vaccines | 2020 | 371 |
| 6 | Volatile antimicrobials from Muscodor crispans, a novel endophytic fungus | Microbiology (United Kingdom) | 2010 | 237 |
| 7 | Model-based multi-locus estimation of decapod phylogeny and divergence times | Molecular Phylogenetics and Evolution | 2005 | 223 |
| 8 | Lost along the way: the significance of evolution in reverse | Trends in Ecology and Evolution | 2003 | 174 |
| 9 | Myc Regulates Chromatin Decompaction and Nuclear Architecture during B Cell Activation | Molecular Cell | 2017 | 174 |
| 10 | Bacterial diversity and ecosystem function of filamentous microbial mats from aphotic (cave) sulfidic springs dominated by chemolithoautotrophic âEpsilonproteobacteriaâ | FEMS Microbiology Ecology | 2004 | 165 |
| 11 | Intrinsic CD4+ T cell sensitivity and response to a pathogen are set and sustained by avidity for thymic and peripheral complexes of self peptide and MHC | Nature Immunology | 2014 | 155 |
| 12 | B cell epitope spreading: Mechanisms and contribution to autoimmune diseases | Immunology Letters | 2015 | 147 |
| 13 | Molecular Characterization of Infectious Clones of the Minute Virus of Canines Reveals Unique Features of Bocaviruses | Journal of Virology | 2009 | 127 |
| 14 | JMATING: a software for the analysis of sexual selection and sexual isolation effects from mating frequency data | BMC Evolutionary Biology | 2006 | 112 |
| 15 | Gender-based differences in host behavior and gut microbiota composition in response to high fat diet and stress in a mouse model | Scientific Reports | 2017 | 112 |
| 16 | The role of oxidative stress in prostate cancer | European Journal of Cancer Prevention | 2012 | 110 |
| 17 | Microsymbiont discrimination mediated by a host-secreted peptide in Medicago truncatula | Proceedings of the National Academy of Sciences of the United States of America | 2017 | 110 |
| 18 | Aberrant Epstein–Barr viral infection in systemic lupus erythematosus | Autoimmunity Reviews | 2009 | 108 |
| 19 | Subterranean phylogeography of freshwater crayfishes shows extensive gene flow and surprisingly large population sizes | Molecular Ecology | 2005 | 105 |
| 20 | Salt-Tolerant Halophyte Rhizosphere Bacteria Stimulate Growth of Alfalfa in Salty Soil | Frontiers in Microbiology | 2019 | 103 |
| 21 | The utility of the new generation of humanized mice to study HIV-1 infection: transmission, prevention, pathogenesis, and treatment | Retrovirology | 2011 | 101 |
| 22 | Francisella tularensisType A Strains Cause the Rapid Encystment ofAcanthamoeba castellaniiand Survive in Amoebal Cysts for Three Weeks Postinfection | Applied and Environmental Microbiology | 2009 | 93 |
| 23 | Interferon Alpha in Systemic Lupus Erythematosus | Journal of Biomedicine and Biotechnology | 2010 | 91 |
| 24 | The PhoU Protein from Escherichia coli Interacts with PhoR, PstB, and Metals To Form a Phosphate-Signaling Complex at the Membrane | Journal of Bacteriology | 2014 | 88 |
| 25 | Software-based analysis of bacteriophage genomes, physical ends, and packaging strategies | BMC Genomics | 2016 | 87 |
| 26 | Virion disruption by ozone-mediated reactive oxygen species | Journal of Virological Methods | 2008 | 83 |
| 27 | Rhizobial peptidase HrrP cleaves host-encoded signaling peptides and mediates symbiotic compatibility | Proceedings of the National Academy of Sciences of the United States of America | 2015 | 82 |
| 28 | Estimating population structure under nonequilibrium conditions in a conservation context: continent‐wide population genetics of the giant Amazon river turtle, Podocnemis expansa (Chelonia; Podocnemididae) | Molecular Ecology | 2006 | 81 |
| 29 | Molecular Characterization of Crustacean Visual Pigments and the Evolution of Pancrustacean Opsins | Molecular Biology and Evolution | 2006 | 79 |
| 30 | Sexual orientation change efforts among current or former LDS church members. | Journal of Counseling Psychology | 2015 | 79 |
| 31 | A Filifactor alocis-centered co-occurrence group associates with periodontitis across different oral habitats | Scientific Reports | 2015 | 78 |
| 32 | Depression and anxiety in systemic lupus erythematosus | Medicine (United States) | 2018 | 77 |
| 33 | Multidisciplinary approaches for studying rhizobium–legume symbioses | Canadian Journal of Microbiology | 2019 | 77 |
| 34 | Desiccation survival in an Antarctic nematode: molecular analysis using expressed sequenced tags | BMC Genomics | 2009 | 76 |
| 35 | Nested clade analysis statistics | Molecular Ecology Notes | 2006 | 73 |
| 36 | Comparing Phylogenetic Codivergence between Polyomaviruses and Their Hosts | Journal of Virology | 2006 | 71 |
| 37 | Rapid separation of bacteria from blood—review and outlook | Biotechnology Progress | 2016 | 71 |
| 38 | Knowledge, Attitudes and Perceptions of COVID-19 Vaccination among Healthcare Workers of an Inner-City Hospital in New York | Vaccines | 2021 | 71 |
| 39 | Follicular Dendritic Cell Regulation of CXCR4-Mediated Germinal Center CD4 T Cell Migration | Journal of Immunology | 2004 | 70 |
| 40 | The new collagen gene contains SOX9-responsive enhancer elements | Matrix Biology | 2005 | 68 |
| 41 | A comparison of generalizability theory and many-facet Rasch measurement in an analysis of college sophomore writing | Assessing Writing | 2004 | 67 |
| 42 | The Stringent Response Is Essential for Pseudomonas aeruginosa Virulence in the Rat Lung Agar Bead and Drosophila melanogaster Feeding Models of Infection | Infection and Immunity | 2011 | 67 |
| 43 | Life in extreme environments: microbial diversity in Great Salt Lake, Utah | Extremophiles | 2014 | 67 |
| 44 | Adjacent DNA sequences modulate Sox9 transcriptional activation at paired Sox sites in three chondrocyte-specific enhancer elements | Nucleic Acids Research | 2003 | 66 |
| 45 | Molecular phylogenetics and diagnosis of soil and clinical isolates of Halicephalobus gingivalis (Nematoda: Cephalobina: Panagrolaimoidea), an opportunistic pathogen of horses | International Journal for Parasitology | 2003 | 63 |
| 46 | Alcohol-free hand sanitizer and other quaternary ammonium disinfectants quickly and effectively inactivate SARS-CoV-2 | Journal of Hospital Infection | 2021 | 63 |
| 47 | Contributions ofFrancisella tularensissubsp.novicidaChitinases and Sec Secretion System to Biofilm Formation on Chitin | Applied and Environmental Microbiology | 2010 | 62 |
| 48 | Aminoadamantanes with Persistent in Vitro Efficacy against H1N1 (2009) Influenza A | Journal of Medicinal Chemistry | 2014 | 62 |
| 49 | Transcriptome assembly, profiling and differential gene expression analysis of the halophyte Suaeda fruticosa provides insights into salt tolerance | BMC Genomics | 2015 | 62 |
| 50 | Plant mitochondrial DNA | Frontiers in Bioscience - Landmark | 2017 | 62 |
