School of Computer Science

974(top 1%)

papers

42.2K(top 0.1%)

citations

91(top 0.1%)

h-index

180(top 0.1%)

g-index

1.2K

all documents

48.7K

doc citations

4.7K

citing journals

Top Articles

#	Title	Journal	Year	Citations
1	GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists	BMC Bioinformatics	2009	3,032
2	PatchDock and SymmDock: servers for rigid and symmetric docking	Nucleic Acids Research	2005	2,610
3	Principles of docking: An overview of search algorithms and a guide to scoring functions	Proteins: Structure, Function and Bioinformatics	2002	1,130
4	Identifying Personal Genomes by Surname Inference	Science	2013	936
5	Network‐based prediction of protein function	Molecular Systems Biology	2007	918
6	Associating Genes and Protein Complexes with Disease via Network Propagation	PLoS Computational Biology	2010	758
7	Computing and rendering point set surfaces	IEEE Transactions on Visualization and Computer Graphics	2003	742
8	FireDock: a web server for fast interaction refinement in molecular docking	Nucleic Acids Research	2008	657
9	Quantification of protein half-lives in the budding yeast proteome	Proceedings of the National Academy of Sciences of the United States of America	2006	623
10	FireDock: Fast interaction refinement in molecular docking	Proteins: Structure, Function and Bioinformatics	2007	607
11	Network-based prediction of human tissue-specific metabolism	Nature Biotechnology	2008	594
12	A Biologically Inspired System for Action Recognition	Nature Biotechnology	2007	530
13	Modeling cellular machinery through biological network comparison	Nature Biotechnology	2006	492
14	Regulatory on/off minimization of metabolic flux changes after genetic perturbations	Proceedings of the National Academy of Sciences of the United States of America	2005	427
15	A Survey on Shape Correspondence	Computer Graphics Forum	2011	419
16	Plasmonic nanostructure design and characterization via Deep Learning	Light: Science and Applications	2018	414
17	A method for simultaneous alignment of multiple protein structures	Proteins: Structure, Function and Bioinformatics	2004	396
18	Discovering Local Structure in Gene Expression Data: The Order-Preserving Submatrix Problem	Journal of Computational Biology	2003	391
19	Mechanism of Two Classes of Cancer Mutations in the Phosphoinositide 3-Kinase Catalytic Subunit	Science	2007	364
20	Multiple diverse ligands binding at a single protein site: A matter of pre-existing populations	Protein Science	2009	364
21	Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data	Proceedings of the National Academy of Sciences of the United States of America	2004	344
22	Protein Structure Fitting and Refinement Guided by Cryo-EM Density	Structure	2008	334
23	Regulatory networks define phenotypic classes of human stem cell lines	Nature	2008	321
24	Compact routing schemes	Nature	2001	310
25	Effective Unconstrained Face Recognition by Combining Multiple Descriptors and Learned Background Statistics	IEEE Transactions on Pattern Analysis and Machine Intelligence	2011	285
26	EXPANDER--an integrative program suite for microarray data analysis	BMC Bioinformatics	2005	283
27	Genome-Wide In Silico Identification of Transcriptional Regulators Controlling the Cell Cycle in Human Cells	Genome Research	2003	275
28	Cluster graph modification problems	Discrete Applied Mathematics	2004	274
29	How prevalent is functional alternative splicing in the human genome?	Trends in Genetics	2004	267
30	Identification of functional modules using network topology and high-throughput data	BMC Systems Biology	2007	267
31	Recognition of Functional Sites in Protein Structures	Journal of Molecular Biology	2004	257
32	A survey of visibility for walkthrough applications	IEEE Transactions on Visualization and Computer Graphics	2003	256
33	Conservation and evolvability in regulatory networks: The evolution of ribosomal regulation in yeast	Proceedings of the National Academy of Sciences of the United States of America	2005	244
34	Neural “Ignition”: Enhanced Activation Linked to Perceptual Awareness in Human Ventral Stream Visual Cortex	Neuron	2009	242
35	Taking geometry to its edge: Fast unbound rigid (and hinge-bent) docking	Proteins: Structure, Function and Bioinformatics	2003	238
36	Reconstruction of Arabidopsis metabolic network models accounting for subcellular compartmentalization and tissue-specificity	Proceedings of the National Academy of Sciences of the United States of America	2012	237
37	PharmaGist: a webserver for ligand-based pharmacophore detection	Nucleic Acids Research	2008	231
38	Characterization of displaced white matter by brain tumors using combined DTI and fMRI	NeuroImage	2006	226
39	Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks	Journal of Computational Biology	2006	225
40	Differential Representations for Mesh Processing	Computer Graphics Forum	2006	215
41	Large-scale reconstruction and phylogenetic analysis of metabolic environments	Proceedings of the National Academy of Sciences of the United States of America	2008	208
42	Space-time super-resolution	IEEE Transactions on Pattern Analysis and Machine Intelligence	2005	206
43	Facial Attractiveness: Beauty and the Machine	Neural Computation	2006	203
44	Comprehensive MicroRNA Profiling Reveals a Unique Human Embryonic Stem Cell Signature Dominated by a Single Seed Sequence	Stem Cells	2008	202
45	Medical Sequencing at the Extremes of Human Body Mass	American Journal of Human Genetics	2007	199
46	The evolution of modularity in bacterial metabolic networks	Proceedings of the National Academy of Sciences of the United States of America	2008	197
47	HingeProt: Automated prediction of hinges in protein structures	Proteins: Structure, Function and Bioinformatics	2008	195
48	Widespread functional connectivity and fMRI fluctuations in human visual cortex in the absence of visual stimulation	NeuroImage	2006	194
49	Computational characterization of B-cell epitopes	Molecular Immunology	2008	194
50	Principles of flexible protein–protein docking	Proteins: Structure, Function and Bioinformatics	2008	186

Profile

Scientometrics

Citing Bodies

School of Computer Science

Top Articles