| # | Title | Journal | Year | Citations |
|---|
| 1 | Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads | PLoS Computational Biology | 2017 | 5,135 |
| 2 | BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis | PLoS Computational Biology | 2019 | 2,484 |
| 3 | Minimal experimental requirements for definition of extracellular vesicles and their functions: a position statement from the International Society for Extracellular Vesicles | Journal of Extracellular Vesicles | 2014 | 2,110 |
| 4 | Generation of a functional mammary gland from a single stem cell | Nature | 2006 | 1,824 |
| 5 | Bandage: interactive visualization of de novo genome assemblies | Bioinformatics | 2015 | 1,671 |
| 6 | Vesiclepedia: A Compendium for Extracellular Vesicles with Continuous Community Annotation | PLoS Biology | 2012 | 1,064 |
| 7 | SRST2: Rapid genomic surveillance for public health and hospital microbiology labs | Genome Medicine | 2014 | 953 |
| 8 | Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae , an urgent threat to public health | Proceedings of the National Academy of Sciences of the United States of America | 2015 | 942 |
| 9 | Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans | Nature Genetics | 2013 | 900 |
| 10 | DynaMut: predicting the impact of mutations on protein conformation, flexibility and stability | Nucleic Acids Research | 2018 | 732 |
| 11 | The Infant Nasopharyngeal Microbiome Impacts Severity of Lower Respiratory Infection and Risk of Asthma Development | Cell Host and Microbe | 2015 | 721 |
| 12 | The Toxicogenomic Multiverse: Convergent Recruitment of Proteins Into Animal Venoms | Annual Review of Genomics and Human Genetics | 2009 | 683 |
| 13 | Evidence that asthma is a developmental origin disease influenced by maternal diet and bacterial metabolites | Nature Communications | 2015 | 683 |
| 14 | Size-Distribution Analysis of Proteins by Analytical Ultracentrifugation: Strategies and Application to Model Systems | Biophysical Journal | 2002 | 639 |
| 15 | Completing bacterial genome assemblies with multiplex MinION sequencing | Microbial Genomics | 2017 | 559 |
| 16 | Cell-Cell Communication between Malaria-Infected Red Blood Cells via Exosome-like Vesicles | Cell | 2013 | 508 |
| 17 | Role and regulation of the ER chaperone BiP | Seminars in Cell and Developmental Biology | 1999 | 473 |
| 18 | C9ORF72, implicated in amytrophic lateral sclerosis and frontotemporal dementia, regulates endosomal trafficking | Human Molecular Genetics | 2014 | 410 |
| 19 | Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events | Nature Genetics | 2015 | 403 |
| 20 | Small RNA deep sequencing reveals a distinct miRNA signature released in exosomes from prion-infected neuronal cells | Nucleic Acids Research | 2012 | 402 |
| 21 | A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex | Nature Communications | 2021 | 394 |
| 22 | mTOR-Dependent Regulation of Ribosomal Gene Transcription Requires S6K1 and Is Mediated by Phosphorylation of the Carboxy-Terminal Activation Domain of the Nucleolar Transcription Factor UBF† | Molecular and Cellular Biology | 2003 | 390 |
| 23 | Gastrointestinal Carriage Is a Major Reservoir of Klebsiella pneumoniae Infection in Intensive Care Patients | Clinical Infectious Diseases | 2017 | 381 |
| 24 | Microbiota-Derived Short-Chain Fatty Acids Promote the Memory Potential of Antigen-Activated CD8+ T Cells | Immunity | 2019 | 378 |
| 25 | Packaging of prions into exosomes is associated with a novel pathway of PrP processing | Journal of Pathology | 2007 | 375 |
| 26 | JNK Signaling: Regulation and Functions Based on Complex Protein-Protein Partnerships | Microbiology and Molecular Biology Reviews | 2016 | 348 |
| 27 | Exosomes: Vehicles for the Transfer of Toxic Proteins Associated with Neurodegenerative Diseases? | Frontiers in Physiology | 2012 | 339 |
| 28 | Klebsiella pneumoniae as a key trafficker of drug resistance genes from environmental to clinically important bacteria | Current Opinion in Microbiology | 2018 | 337 |
| 29 | Prognostic serum miRNA biomarkers associated with Alzheimer’s disease shows concordance with neuropsychological and neuroimaging assessment | Molecular Psychiatry | 2015 | 315 |
| 30 | Germline Mutations in the BRIP1, BARD1, PALB2, and NBN Genes in Women With Ovarian Cancer | Journal of the National Cancer Institute | 2015 | 311 |
| 31 | Human Leukocyte Antigen Class I-Restricted Activation of CD8+ T Cells Provides the Immunogenetic Basis of a Systemic Drug Hypersensitivity | Immunity | 2008 | 309 |
| 32 | Super-Resolution Dissection of Coordinated Events during Malaria Parasite Invasion of the Human Erythrocyte | Cell Host and Microbe | 2011 | 303 |
| 33 | Structural and Functional Analysis of a Plant Resistance Protein TIR Domain Reveals Interfaces for Self-Association, Signaling, and Autoregulation | Cell Host and Microbe | 2011 | 301 |
| 34 | Evolution of an Arsenal | Molecular and Cellular Proteomics | 2008 | 298 |
| 35 | Proteome profiling of exosomes derived from human primary and metastatic colorectal cancer cells reveal differential expression of key metastatic factors and signal transduction components | Proteomics | 2013 | 296 |
| 36 | Characterization and deep sequencing analysis of exosomal and non-exosomal miRNA in human urine | Kidney International | 2014 | 295 |
| 37 | Artemisinin Action and Resistance in Plasmodium falciparum | Trends in Parasitology | 2016 | 271 |
| 38 | Prion-like domains in RNA binding proteins are essential for building subnuclear paraspeckles | Journal of Cell Biology | 2015 | 269 |
| 39 | Isolation of viable Plasmodium falciparum merozoites to define erythrocyte invasion events and advance vaccine and drug development | Proceedings of the National Academy of Sciences of the United States of America | 2010 | 262 |
| 40 | c-Jun N-terminal kinase (JNK) signaling: Recent advances and challenges | Biochimica Et Biophysica Acta - Proteins and Proteomics | 2010 | 257 |
| 41 | A Systematic and Functional Classification of Streptococcus pyogenes That Serves as a New Tool for Molecular Typing and Vaccine Development | Journal of Infectious Diseases | 2014 | 257 |
| 42 | Genomic history of the seventh pandemic of cholera in Africa | Science | 2017 | 255 |
| 43 | The broad spectrum antiviral ivermectin targets the host nuclear transport importin α/β1 heterodimer | Antiviral Research | 2020 | 255 |
| 44 | Genomic insights into the emergence and spread of antimicrobial-resistant bacterial pathogens | Science | 2018 | 254 |
| 45 | mCSM-PPI2: predicting the effects of mutations on protein–protein interactions | Nucleic Acids Research | 2019 | 247 |
| 46 | Plasmodium falciparum Heterochromatin Protein 1 Marks Genomic Loci Linked to Phenotypic Variation of Exported Virulence Factors | PLoS Pathogens | 2009 | 243 |
| 47 | Dopamine promotes α‐synuclein aggregation into SDS‐resistant soluble oligomers via a distinct folding pathway | FASEB Journal | 2005 | 239 |
| 48 | Kaptive Web: User-Friendly Capsule and Lipopolysaccharide Serotype Prediction for Klebsiella Genomes | Journal of Clinical Microbiology | 2018 | 239 |
| 49 | Mitochondrial metabolism of sexual and asexual blood stages of the malaria parasite Plasmodium falciparum | BMC Biology | 2013 | 238 |
| 50 | The role of innate immune responses and neuroinflammation in amyloid accumulation and progression of Alzheimer's disease | Immunology and Cell Biology | 2020 | 231 |
