| The Microbiome and the Respiratory Tract | Annual Review of Physiology | 2016 | 426 |
| A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes | Cell | 2016 | 388 |
| Polysaccharide Degradation by the Intestinal Microbiota and Its Influence on Human Health and Disease | Journal of Molecular Biology | 2016 | 251 |
| Enrichment of the lung microbiome with gut bacteria in sepsis and the acute respiratory distress syndrome | Nature Microbiology | 2016 | 250 |
| Prebiotics: why definitions matter | Current Opinion in Biotechnology | 2016 | 245 |
| Antibiotic-Induced Alterations of the Gut Microbiota Alter Secondary Bile Acid Production and Allow for Clostridium difficile Spore Germination and Outgrowth in the Large Intestine | MSphere | 2016 | 216 |
| The Lung Microbiome, Immunity, and the Pathogenesis of Chronic Lung Disease | Journal of Immunology | 2016 | 199 |
| Gut Microbiota-Induced Immunoglobulin G Controls Systemic Infection by Symbiotic Bacteria and Pathogens | Immunity | 2016 | 198 |
| A Plea to Reassess the Role of United States Medical Licensing Examination Step 1 Scores in Residency Selection | Academic Medicine | 2016 | 157 |
| Functional Characterization of Inflammatory Bowel Disease-Associated Gut Dysbiosis in Gnotobiotic Mice | Cellular and Molecular Gastroenterology and Hepatology | 2016 | 123 |
| The Sus operon: a model system for starch uptake by the human gut Bacteroidetes | Cellular and Molecular Life Sciences | 2016 | 117 |
| Phosphatidic Acid-Mediated Signaling Regulates Microneme Secretion in Toxoplasma | Cell Host and Microbe | 2016 | 93 |
| Metabolic and Community Synergy of Oral Bacteria in Colorectal Cancer | MSphere | 2016 | 91 |
| Signaling and Polarized Communication Across the T Cell Immunological Synapse | Annual Review of Cell and Developmental Biology | 2016 | 81 |
| Dynamics of the fecal microbiome in patients with recurrent and nonrecurrent Clostridium difficile infection | Genome Medicine | 2016 | 75 |
| Development of an Orally Available and Central Nervous System (CNS) Penetrant Toxoplasma gondii Calcium-Dependent Protein Kinase 1 (TgCDPK1) Inhibitor with Minimal Human Ether-a-go-go-Related Gene (hERG) Activity for the Treatment of Toxoplasmosis | Journal of Medicinal Chemistry | 2016 | 68 |
| Transfer of Maternal Immune Cells by Breastfeeding: Maternal Cytotoxic T Lymphocytes Present in Breast Milk Localize in the Peyer's Patches of the Nursed Infant | PLoS ONE | 2016 | 68 |
| Transcriptional start site heterogeneity modulates the structure and function of the HIV-1 genome | Proceedings of the National Academy of Sciences of the United States of America | 2016 | 54 |
| Siderophore vaccine conjugates protect against uropathogenic Escherichia coli urinary tract infection | Proceedings of the National Academy of Sciences of the United States of America | 2016 | 54 |
| A polysaccharide utilization locus from enables conversion of recalcitrant chitin | Biotechnology for Biofuels | 2016 | 53 |
| The Versatile Type VI Secretion System | Microbiology Spectrum | 2016 | 52 |
| Factors associated with incomplete childhood immunization in Arbegona district, southern Ethiopia: a case--control study | BMC Public Health | 2016 | 50 |
| Molecular Dissection of Xyloglucan Recognition in a Prominent Human Gut Symbiont | MBio | 2016 | 49 |
| Acinetobacter baumannii Genes Required for Bacterial Survival during Bloodstream Infection | MSphere | 2016 | 48 |
| Inhibition of human norovirus by a viral polymerase inhibitor in the B cell culture system and in the mouse model | Antiviral Research | 2016 | 45 |
