| # | Title | Journal | Year | Citations |
|---|
| 1 | Arabidopsis Argonaute 2 Regulates Innate Immunity via miRNA393∗-Mediated Silencing of a Golgi-Localized SNARE Gene, MEMB12 | Molecular Cell | 2011 | 386 |
| 2 | A novel class of bacteria-induced small RNAs in Arabidopsis | Genes and Development | 2007 | 296 |
| 3 | Oomycete pathogens encode RNA silencing suppressors | Nature Genetics | 2013 | 238 |
| 4 | Meta-analysis reveals ammonia-oxidizing bacteria respond more strongly to nitrogen addition than ammonia-oxidizing archaea | Soil Biology and Biochemistry | 2016 | 194 |
| 5 | MicroRNAs Suppress NB Domain Genes in Tomato That Confer Resistance to Fusarium oxysporum | PLoS Pathogens | 2014 | 187 |
| 6 | Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles | PLoS Genetics | 2016 | 177 |
| 7 | The Receptor-Like Kinase SERK3/BAK1 Is Required for Basal Resistance against the Late Blight Pathogen Phytophthora infestans in Nicotiana benthamiana | PLoS ONE | 2011 | 170 |
| 8 | De novo Assembly of a 40 Mb Eukaryotic Genome from Short Sequence Reads: Sordaria macrospora, a Model Organism for Fungal Morphogenesis | PLoS Genetics | 2010 | 169 |
| 9 | A Disease-Associated Microbial and Metabolomics State in Relatives of Pediatric Inflammatory Bowel Disease Patients | Cellular and Molecular Gastroenterology and Hepatology | 2016 | 163 |
| 10 | A Modular Organization of the Human Intestinal Mucosal Microbiota and Its Association with Inflammatory Bowel Disease | PLoS ONE | 2013 | 147 |
| 11 | Intra-specific and intra-sporocarp ITS variation of ectomycorrhizal fungi as assessed by rDNA sequencing of sporocarps and pooled ectomycorrhizal roots from a Quercus woodland | Mycorrhiza | 2007 | 121 |
| 12 | A Pleiotropic Missense Variant in SLC39A8 Is Associated With Crohn’s Disease and Human Gut Microbiome Composition | Gastroenterology | 2016 | 109 |
| 13 | Human antibodies targeting Zika virus NS1 provide protection against disease in a mouse model | Nature Communications | 2018 | 88 |
| 14 | Are true multihost fungi the exception or the rule? Dominant ectomycorrhizal fungi on Pinus sabiniana differ from those on co‐occurring Quercus species | New Phytologist | 2009 | 86 |
| 15 | The Genome and Development-Dependent Transcriptomes of Pyronema confluens: A Window into Fungal Evolution | PLoS Genetics | 2013 | 85 |
| 16 | Innovation and constraint leading to complex multicellularity in the Ascomycota | Nature Communications | 2017 | 84 |
| 17 | Evolutionary histories of soil fungi are reflected in their large‐scale biogeography | Ecology Letters | 2014 | 80 |
| 18 | A Metaproteomic Approach to Study Human-Microbial Ecosystems at the Mucosal Luminal Interface | PLoS ONE | 2011 | 73 |
| 19 | Safeguarding Fruit Crops in the Age of Agricultural Globalization | Plant Disease | 2015 | 72 |
| 20 | Evolution of prokaryotic and eukaryotic virulence effectors | Current Opinion in Plant Biology | 2008 | 69 |
| 21 | 5'-Serial Analysis of Gene Expression studies reveal a transcriptomic switch during fruiting body development in Coprinopsis cinerea | BMC Genomics | 2013 | 65 |
| 22 | Systemic Control of Plasmacytoid Dendritic Cells by CD8+ T Cells and Commensal Microbiota | Journal of Immunology | 2008 | 64 |
| 23 | Optical Nano-Constructs Composed of Genome-Depleted Brome Mosaic Virus Doped with a Near Infrared Chromophore for Potential Biomedical Applications | ACS Nano | 2011 | 61 |
| 24 | Direct and indirect effects of native range expansion on soil microbial community structure and function | Journal of Ecology | 2016 | 55 |
| 25 | How well do ITS rDNA sequences differentiate species of true morels (Morchella)? | Mycologia | 2012 | 49 |
| 26 | Two serine residues in Pseudomonas syringae effector HopZ1a are required for acetyltransferase activity and association with the host co‐factor | New Phytologist | 2015 | 45 |
| 27 | Antifungal activity of avocado rhizobacteria against Fusarium euwallaceae and Graphium spp., associated with Euwallacea spp. nr. fornicatus, and Phytophthora cinnamomi | Antonie Van Leeuwenhoek | 2018 | 45 |
| 28 | Soil Microbial Community Structure and Metabolic Activity of Pinus elliottii Plantations across Different Stand Ages in a Subtropical Area | PLoS ONE | 2015 | 41 |
| 29 | Concurrent gut transcriptome and microbiota profiling following chronic ethanol consumption in nonhuman primates | Gut Microbes | 2018 | 41 |
| 30 | The Role of Coral-Associated Bacterial Communities in Australian Subtropical White Syndrome of Turbinaria mesenterina | PLoS ONE | 2012 | 40 |
| 31 | Systematic Development of Phytophthora Species-Specific Mitochondrial Diagnostic Markers for Economically Important Members of the Genus | Plant Disease | 2017 | 40 |
| 32 | Natamycin, a New Biofungicide for Managing Crown Rot of Strawberry Caused by QoI-Resistant Colletotrichum acutatum | Plant Disease | 2018 | 38 |
| 33 | Comparative Genomics of Wild Bee and Flower Isolated Lactobacillus Reveals Potential Adaptation to the Bee Host | Genome Biology and Evolution | 2019 | 38 |
| 34 | Myb Transcription Factors and Light Regulate Sporulation in the Oomycete Phytophthora infestans | PLoS ONE | 2014 | 36 |
| 35 | Meeting Report: Fungal ITS Workshop (October 2012) | Standards in Genomic Sciences | 2013 | 34 |
| 36 | Complete Genome Sequence of Xanthomonas arboricola pv. juglandis 417, a Copper-Resistant Strain Isolated from Juglans regia L | Genome Announcements | 2015 | 29 |
| 37 | Identification of Alternaria Species Causing Heart Rot of Pomegranates in California | Plant Disease | 2017 | 28 |
| 38 | Genetic Variation within Clonal Lineages of Phytophthora infestans Revealed through Genotyping-By-Sequencing, and Implications for Late Blight Epidemiology | PLoS ONE | 2016 | 26 |
| 39 | Postharvest Strategies for Managing Phytophthora Brown Rot of Citrus using Potassium Phosphite in Combination with Heat Treatments | Plant Disease | 2015 | 25 |
| 40 | Decay of Genes Encoding the Oomycete Flagellar Proteome in the Downy Mildew Hyaloperonospora arabidopsidis | PLoS ONE | 2012 | 24 |
| 41 | Re-evaluation of Japanese Phytophthora isolates based on molecular phylogenetic analyses | Mycoscience | 2014 | 24 |
| 42 | Evaluations of Insecticides and Fungicides for Reducing Attack Rates of a new invasive ambrosia beetle (Euwallacea Sp., Coleoptera: Curculionidae: Scolytinae) in Infested Landscape Trees in California | Journal of Economic Entomology | 2017 | 23 |
| 43 | Populations of Phytophthora rubi Show Little Differentiation and High Rates of Migration Among States in the Western United States | Molecular Plant-Microbe Interactions | 2018 | 23 |
| 44 | Sequential Utilization of Hosts from Different Fly Families by Genetically Distinct, Sympatric Populations within the Entomophthora muscae Species Complex | PLoS ONE | 2013 | 22 |
| 45 | Discovery of Plant MicroRNAs and Short-Interfering RNAs by Deep Parallel Sequencing | Methods in Molecular Biology | 2009 | 20 |
| 46 | Calcineurin Subunits A and B Interact to Regulate Growth and Asexual and Sexual Development in Neurospora crassa | PLoS ONE | 2016 | 20 |
| 47 | A Quantum Dot-Immunofluorescent Labeling Method to Investigate the Interactions between a Crinivirus and Its Whitefly Vector | Frontiers in Microbiology | 2013 | 19 |
| 48 | Past and future of a century old Citrus tristeza virus collection: a California citrus germplasm tale | Frontiers in Microbiology | 2013 | 19 |
| 49 | Identification of a response regulator involved in surface attachment, cell–cell aggregation, exopolysaccharide production and virulence in the plant pathogen Xylella fastidiosa | Molecular Plant Pathology | 2013 | 17 |
| 50 | Occurrence, incidence and associations among fungal pathogens and Agrilus auroguttatus, and their roles in Quercus agrifolia decline in California | Forest Pathology | 2014 | 17 |
