| # | Title | Journal | Year | Citations |
|---|
| 1 | Interferon modulation of cellular microRNAs as an antiviral mechanism | Nature | 2007 | 827 |
| 2 | The Transporter Classification Database (TCDB): recent advances | Nucleic Acids Research | 2016 | 711 |
| 3 | A global network of transcription factors, involving E2A, EBF1 and Foxo1, that orchestrates B cell fate | Nature Immunology | 2010 | 475 |
| 4 | The Transporter Classification Database | Nucleic Acids Research | 2014 | 437 |
| 5 | Gut Bacteroides species in health and disease | Gut Microbes | 2021 | 383 |
| 6 | Global changes in the nuclear positioning of genes and intra- and interdomain genomic interactions that orchestrate B cell fate | Nature Immunology | 2012 | 249 |
| 7 | The Transporter Classification Database (TCDB): 2021 update | Nucleic Acids Research | 2021 | 192 |
| 8 | The opposing roles of the transcription factor E2A and its antagonist Id3 that orchestrate and enforce the naive fate of T cells | Nature Immunology | 2011 | 121 |
| 9 | Preparing samples from whole cells using focused-ion-beam milling for cryo-electron tomography | Nature Protocols | 2020 | 114 |
| 10 | Global landscape of cell envelope protein complexes in Escherichia coli | Nature Biotechnology | 2018 | 110 |
| 11 | Id2 and Id3 maintain the regulatory T cell pool to suppress inflammatory disease | Nature Immunology | 2014 | 108 |
| 12 | Holins in Bacteria, Eukaryotes, and Archaea: Multifunctional Xenologues with Potential Biotechnological and Biomedical Applications | Journal of Bacteriology | 2015 | 105 |
| 13 | Late-Onset Chronic Inflammatory Encephalopathy in Immune-Competent and Severe Combined Immune-Deficient (SCID) Mice with Astrocyte-Targeted Expression of Tumor Necrosis Factor | American Journal of Pathology | 1998 | 103 |
| 14 | Positive intergenic feedback circuitry, involving EBF1 and FOXO1, orchestrates B-cell fate | Proceedings of the National Academy of Sciences of the United States of America | 2012 | 101 |
| 15 | Chromatin Topology and the Regulation of Antigen Receptor Assembly | Annual Review of Immunology | 2012 | 89 |
| 16 | CCCTC-Binding Factor Translates Interleukin 2- and α-Ketoglutarate-Sensitive Metabolic Changes in T Cells into Context-Dependent Gene Programs | Immunity | 2017 | 84 |
| 17 | The SARS-Coronavirus Infection Cycle: A Survey of Viral Membrane Proteins, Their Functional Interactions and Pathogenesis | International Journal of Molecular Sciences | 2021 | 83 |
| 18 | Expansion of the APC superfamily of secondary carriers | Proteins: Structure, Function and Bioinformatics | 2014 | 82 |
| 19 | Bioinformatic Characterization of P-Type ATPases Encoded Within the Fully Sequenced Genomes of 26 Eukaryotes | Journal of Membrane Biology | 2009 | 79 |
| 20 | The transcription factors E2A and HEB act in concert to induce the expression of FOXO1 in the common lymphoid progenitor | Proceedings of the National Academy of Sciences of the United States of America | 2011 | 75 |
| 21 | The Bacterial Phosphotransferase System: New Frontiers 50 Years after Its Discovery | Journal of Molecular Microbiology and Biotechnology | 2015 | 70 |
| 22 | Comprehensive characterization of neutrophil genome topology | Genes and Development | 2017 | 67 |
| 23 | New roles for DNA cytosine modification, eRNA, anchors, and superanchors in developing B cell progenitors | Proceedings of the National Academy of Sciences of the United States of America | 2015 | 65 |
| 24 | BioV Suite – a collection of programs for the study of transport protein evolution | FEBS Journal | 2012 | 55 |
| 25 | Bioinformatic characterization of the Anoctamin Superfamily of Ca2+-activated ion channels and lipid scramblases | PLoS ONE | 2018 | 52 |
| 26 | The Bacterial Intimins and Invasins: A Large and Novel Family of Secreted Proteins | PLoS ONE | 2010 | 50 |
| 27 | Evolutionary relationship between 5+5 and 7+7 inverted repeat folds within the amino acid-polyamine-organocation superfamily | Proteins: Structure, Function and Bioinformatics | 2014 | 48 |
| 28 | The involvement of transport proteins in transcriptional and metabolic regulation | Current Opinion in Microbiology | 2014 | 45 |
| 29 | Systems Biology Analysis Reveals Eight SLC22 Transporter Subgroups, Including OATs, OCTs, and OCTNs | International Journal of Molecular Sciences | 2020 | 44 |
| 30 | The E–Id protein axis modulates the activities of the PI3K–AKT–mTORC1–Hif1a and c-myc/p19Arf pathways to suppress innate variant TFH cell development, thymocyte expansion, and lymphomagenesis | Genes and Development | 2015 | 43 |
| 31 | Transport protein evolution deduced from analysis of sequence, topology and structure | Current Opinion in Structural Biology | 2016 | 43 |
| 32 | The phosphocarrier protein HPr of the bacterial phosphotransferase system globally regulates energy metabolism by directly interacting with multiple enzymes in Escherichia coli | Journal of Biological Chemistry | 2017 | 42 |
| 33 | Calcium signaling instructs NIPBL recruitment at active enhancers and promoters via distinct mechanisms to reconstruct genome compartmentalization | Genes and Development | 2021 | 42 |
| 34 | Expansion of the Major Facilitator Superfamily (MFS) to include novel transporters as well as transmembrane-acting enzymes | Biochimica Et Biophysica Acta - Biomembranes | 2020 | 40 |
| 35 | Comparative genomics of metabolic capacities of regulons controlled by cis-regulatory RNA motifs in bacteria | BMC Genomics | 2013 | 39 |
| 36 | The material properties of a bacterial-derived biomolecular condensate tune biological function in natural and synthetic systems | Nature Communications | 2022 | 39 |
| 37 | Transposon-Mediated Adaptive and Directed Mutations and Their Potential Evolutionary Benefits | Journal of Molecular Microbiology and Biotechnology | 2011 | 37 |
| 38 | Architecture and self-assembly of the jumbo bacteriophage nuclear shell | Nature | 2022 | 37 |
| 39 | Comparative genomics of transport proteins in seven Bacteroides species | PLoS ONE | 2018 | 34 |
| 40 | Nuclear positioning rather than contraction controls ordered rearrangements of immunoglobulin loci | Nucleic Acids Research | 2016 | 33 |
| 41 | Evolutionary relationships of ATP-Binding Cassette (ABC) uptake porters | BMC Microbiology | 2013 | 30 |
| 42 | Microcompartments and Protein Machines in Prokaryotes | Journal of Molecular Microbiology and Biotechnology | 2013 | 28 |
| 43 | Upon microbial challenge, human neutrophils undergo rapid changes in nuclear architecture and chromatin folding to orchestrate an immediate inflammatory gene program | Genes and Development | 2020 | 27 |
| 44 | Id3 Orchestrates Germinal Center B Cell Development | Molecular and Cellular Biology | 2016 | 26 |
| 45 | The LysE Superfamily of Transport Proteins Involved in Cell Physiology and Pathogenesis | PLoS ONE | 2015 | 25 |
| 46 | Regulation of <b><i>crp</i></b> Gene Expression by the Catabolite Repressor/Activator, Cra, in <b><i>Escherichia coli</i></b> | Journal of Molecular Microbiology and Biotechnology | 2014 | 23 |
| 47 | Autism and Our Intestinal Microbiota | Journal of Molecular Microbiology and Biotechnology | 2015 | 23 |
| 48 | Properties and Phylogeny of 76 Families of Bacterial and Eukaryotic Organellar Outer Membrane Pore-Forming Proteins | PLoS ONE | 2016 | 22 |
| 49 | Comparative genomics of transport proteins in developmental bacteria: Myxococcus xanthus and Streptomyces coelicolor | BMC Microbiology | 2013 | 21 |
| 50 | The Murine Model for Hantaan Virus-Induced Lethal Disease Shows Two Distinct Paths in Viral Evolutionary Trajectory with and without Ribavirin Treatment | Journal of Virology | 2013 | 21 |
