| How to apply de Bruijn graphs to genome assembly | Nature Biotechnology | 2011 | 341 |
| An augmented Lagrangian method for total variation video restoration | IEEE Transactions on Image Processing | 2011 | 332 |
| Efficient de novo assembly of single-cell bacterial genomes from short-read data sets | Nature Biotechnology | 2011 | 177 |
| GPU-based iterative cone-beam CT reconstruction using tight frame regularization | Physics in Medicine and Biology | 2011 | 128 |
| Queueing up for enzymatic processing: correlated signaling through coupled degradation | Molecular Systems Biology | 2011 | 124 |
| Noise Folding in Compressed Sensing | IEEE Signal Processing Letters | 2011 | 108 |
| The evolving field of imaging mass spectrometry and its impact on future biological research | Journal of Mass Spectrometry | 2011 | 99 |
| Conditional Akaike information under generalized linear and proportional hazards mixed models | Biometrika | 2011 | 52 |
| Paired de bruijn graphs: a novel approach for incorporating mate pair information into genome assemblers | Journal of Computational Biology | 2011 | 50 |
| Low-dose 4DCT reconstruction via temporal nonlocal means | Medical Physics | 2011 | 49 |
| Convergence of the parabolic complex Monge–Ampère equation on compact Hermitian manifolds | Communications in Analysis and Geometry | 2011 | 49 |
| Efficient mesh optimization schemes based on Optimal Delaunay Triangulations | Computer Methods in Applied Mechanics and Engineering | 2011 | 48 |
| Quasisymmetric Schur functions | Journal of Combinatorial Theory - Series A | 2011 | 43 |
| Dielectric Boundary Force in Molecular Solvation with the Poisson-Boltzmann Free Energy: A Shape Derivative Approach | SIAM Journal on Applied Mathematics | 2011 | 41 |
| Nonholonomic Hamilton–Jacobi theory via Chaplygin Hamiltonization | Journal of Geometry and Physics | 2011 | 40 |
| Proper analytic free maps | Journal of Functional Analysis | 2011 | 39 |
| Analytic mappings between noncommutative pencil balls | Journal of Mathematical Analysis and Applications | 2011 | 37 |
| Probability of unique integer solution to a system of linear equations | European Journal of Operational Research | 2011 | 35 |
| Local resilience of almost spanning trees in random graphs | Random Structures and Algorithms | 2011 | 31 |
| Nonlinear Dynamics of the 3D Pendulum | Journal of Nonlinear Science | 2011 | 30 |
| The structure of almost all graphs in a hereditary property | Journal of Combinatorial Theory Series B | 2011 | 30 |
| Web-based assessment and brief intervention for alcohol use in women of childbearing potential: a report of the primary findings | Alcoholism: Clinical and Experimental Research | 2011 | 29 |
| Lower bounds for the scalar curvatures of noncompact gradient Ricci solitons | Comptes Rendus Mathematique | 2011 | 25 |
| The Re-Encoding Transformation in Algebraic List-Decoding of Reed–Solomon Codes | IEEE Transactions on Information Theory | 2011 | 25 |
