Department of Evolution and Ecology

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#	Title	Journal	Year	Citations
1	Insights into the phylogeny and coding potential of microbial dark matter	Nature	2013	2,239
2	Anthropogenic debris in seafood: Plastic debris and fibers from textiles in fish and bivalves sold for human consumption	Scientific Reports	2015	978
3	Are animal personality traits linked to life-history productivity?	Trends in Ecology and Evolution	2008	945
4	A global meta‐analysis of the relative extent of intraspecific trait variation in plant communities	Ecology Letters	2015	768
5	Do consistent individual differences in metabolic rate promote consistent individual differences in behavior?	Trends in Ecology and Evolution	2010	689
6	Bacterial Communities of Diverse Drosophila Species: Ecological Context of a Host–Microbe Model System	PLoS Genetics	2011	650
7	Population Genomics: Whole-Genome Analysis of Polymorphism and Divergence in Drosophila simulans	PLoS Biology	2007	583
8	Marine range shifts and species introductions: comparative spread rates and community impacts	Global Ecology and Biogeography	2010	443
9	The effect of natal experience on habitat preferences	Trends in Ecology and Evolution	2004	424
10	The Capsella rubella genome and the genomic consequences of rapid mating system evolution	Nature Genetics	2013	374
11	Inclusive fitness theory and eusociality	Nature	2011	339
12	Assembling the Marine Metagenome, One Cell at a Time	PLoS ONE	2009	320
13	Population Genomics of Sub-Saharan Drosophila melanogaster: African Diversity and Non-African Admixture	PLoS Genetics	2012	318
14	2019 Novel Coronavirus (COVID-19) Pandemic: Built Environment Considerations To Reduce Transmission	MSystems	2020	302
15	Dmrt genes in the development and evolution of sexual dimorphism	Trends in Genetics	2012	281
16	Genetics of ecological divergence during speciation	Nature	2014	264
17	Limited potential for adaptation to climate change in a broadly distributed marine crustacean	Proceedings of the Royal Society B: Biological Sciences	2012	262
18	Ocean acidification through the lens of ecological theory	Ecology	2015	237
19	Functional impacts of ocean acidification in an ecologically critical foundation species	Journal of Experimental Biology	2011	204
20	Complete genomic and epigenetic maps of human centromeres	Science	2022	204
21	The Spectre of Too Many Species	Systematic Biology	2019	189
22	Individual differences in behaviour explain variation in survival: a meta‐analysis	Ecology Letters	2020	186
23	Beyond connectivity: how empirical methods can quantify population persistence to improve marine protected‐area design	Ecological Applications	2014	184
24	A synthesis of transplant experiments and ecological niche models suggests that range limits are often niche limits	Ecology Letters	2016	184
25	Ocean warming increases threat of invasive species in a marine fouling community	Ecology	2010	182
26	Persistent carry‐over effects of planktonic exposure to ocean acidification in the Olympia oyster	Ecology	2012	177
27	Systematic Identification of Gene Families for Use as “Markers” for Phylogenetic and Phylogeny-Driven Ecological Studies of Bacteria and Archaea and Their Major Subgroups	PLoS ONE	2013	171
28	Sequence of the Sugar Pine Megagenome	Genetics	2016	169
29	Ocean acidification can mediate biodiversity shifts by changing biogenic habitat	Nature Climate Change	2017	164
30	Persistent spatial structuring of coastal ocean acidification in the California Current System	Scientific Reports	2017	146
31	Ten questions concerning the microbiomes of buildings	Building and Environment	2016	143
32	Coral reefs promote the evolution of morphological diversity and ecological novelty in labrid fishes	Ecology Letters	2011	134
33	A Morphospace for Reef Fishes: Elongation Is the Dominant Axis of Body Shape Evolution	PLoS ONE	2014	126
34	Biodiversity in water and on land	Current Biology	2012	124
35	Evolution of Sex-Specific Traits through Changes in HOX-Dependent doublesex Expression	PLoS Biology	2011	122
36	Parallel Gene Expression Differences between Low and High Latitude Populations of Drosophila melanogaster and D. simulans	PLoS Genetics	2015	121
37	Sexual bimaturation and sexual size dimorphism in animals with asymptotic growth after maturity	Evolutionary Ecology	1997	119
38	How deep is the conflict between molecular and fossil evidence on the age of angiosperms?	New Phytologist	2019	119
39	Interacting environmental mosaics drive geographic variation in mussel performance and predation vulnerability	Ecology Letters	2016	118
40	Comparative analysis of the Pocillopora damicornis genome highlights role of immune system in coral evolution	Scientific Reports	2018	112
41	Highly contiguous assemblies of 101 drosophilid genomes	ELife	2021	108
42	Drosophila Regulate Yeast Density and Increase Yeast Community Similarity in a Natural Substrate	PLoS ONE	2012	108
43	Population genomics of the critically endangered kākāpō	Cell Genomics	2021	106
44	Temporal diversification of Mesoamerican cichlid fishes across a major biogeographic boundary	Molecular Phylogenetics and Evolution	2004	104
45	Historical baselines in marine bioinvasions: Implications for policy and management	PLoS ONE	2018	103
46	Stalking the Fourth Domain in Metagenomic Data: Searching for, Discovering, and Interpreting Novel, Deep Branches in Marker Gene Phylogenetic Trees	PLoS ONE	2011	95
47	The nature of serpentine endemism	American Journal of Botany	2014	95
48	An evolutionary shift in the regulation of the Hippo pathway between mice and flies	Oncogene	2014	94
49	Alien plant invasions in tropical and sub-tropical savannas: patterns, processes and prospects	Biological Invasions	2010	93
50	Whole-Genome Expression Plasticity across Tropical and Temperate Drosophila melanogaster Populations from Eastern Australia	Molecular Biology and Evolution	2011	92

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