| # | Title | Journal | Year | Citations |
|---|
| 1 | Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition) | Autophagy | 2016 | 4,701 |
| 2 | Microbiota-activated PPAR-γ signaling inhibits dysbiotic Enterobacteriaceae expansion | Science | 2017 | 796 |
| 3 | Depletion of Butyrate-Producing Clostridia from the Gut Microbiota Drives an Aerobic Luminal Expansion of Salmonella | Cell Host and Microbe | 2016 | 600 |
| 4 | Paradoxical effects of obesity on T cell function during tumor progression and PD-1 checkpoint blockade | Nature Medicine | 2019 | 539 |
| 5 | Simian immunodeficiency virus–induced mucosal interleukin-17 deficiency promotes Salmonella dissemination from the gut | Nature Medicine | 2008 | 509 |
| 6 | HIV-Infected Individuals with Low CD4/CD8 Ratio despite Effective Antiretroviral Therapy Exhibit Altered T Cell Subsets, Heightened CD8+ T Cell Activation, and Increased Risk of Non-AIDS Morbidity and Mortality | PLoS Pathogens | 2014 | 495 |
| 7 | Highly evolvable malaria vectors: The genomes of 16 Anopheles mosquitoes | Science | 2015 | 492 |
| 8 | Critical function for Naip5 in inflammasome activation by a conserved carboxy-terminal domain of flagellin | Nature Immunology | 2008 | 428 |
| 9 | Dysbiotic Proteobacteria expansion: a microbial signature of epithelial dysfunction | Current Opinion in Microbiology | 2017 | 420 |
| 10 | Colonocyte metabolism shapes the gut microbiota | Science | 2018 | 411 |
| 11 | NOD1 and NOD2 signalling links ER stress with inflammation | Nature | 2016 | 396 |
| 12 | Evolution of the Chaperone/Usher Assembly Pathway: Fimbrial Classification Goes Greek | Microbiology and Molecular Biology Reviews | 2007 | 283 |
| 13 | The Cytokine IL-22 Promotes Pathogen Colonization by Suppressing Related Commensal Bacteria | Immunity | 2014 | 252 |
| 14 | Associations of impaired behaviors with elevated plasma chemokines in autism spectrum disorders | Journal of Neuroimmunology | 2011 | 235 |
| 15 | Decreased transforming growth factor beta1 in autism: A potential link between immune dysregulation and impairment in clinical behavioral outcomes | Journal of Neuroimmunology | 2008 | 221 |
| 16 | Altered gene expression and function of peripheral blood natural killer cells in children with autism | Brain, Behavior, and Immunity | 2009 | 217 |
| 17 | Altered T cell responses in children with autism | Brain, Behavior, and Immunity | 2011 | 217 |
| 18 | Manipulation of small Rho GTPases is a pathogen-induced process detected by NOD1 | Nature | 2013 | 210 |
| 19 | Oxygen as a driver of gut dysbiosis | Free Radical Biology and Medicine | 2017 | 208 |
| 20 | Metagenomic Sequencing of an In Vitro-Simulated Microbial Community | PLoS ONE | 2010 | 200 |
| 21 | Mucosal immune responses to HIV-1 in elite controllers: a potential correlate of immune control | Blood | 2009 | 198 |
| 22 | Identification of VceA and VceC, two members of the VjbR regulon that are translocated into macrophages by the Brucella type IV secretion system | Molecular Microbiology | 2008 | 181 |
| 23 | The Vi Capsular Antigen of Salmonella enterica Serotype Typhi Reduces Toll-Like Receptor-Dependent Interleukin-8 Expression in the Intestinal Mucosa | Infection and Immunity | 2005 | 176 |
| 24 | Streptomycin-Induced Inflammation Enhances Escherichia coli Gut Colonization Through Nitrate Respiration | MBio | 2013 | 176 |
| 25 | Life in the inflamed intestine, Salmonella style | Trends in Microbiology | 2009 | 172 |
| 26 | Salmonella bongori Provides Insights into the Evolution of the Salmonellae | PLoS Pathogens | 2011 | 171 |
| 27 | Systematic Identification of Gene Families for Use as “Markers” for Phylogenetic and Phylogeny-Driven Ecological Studies of Bacteria and Archaea and Their Major Subgroups | PLoS ONE | 2013 | 171 |
| 28 | Immune activation of peripheral blood and mucosal CD3+ lymphocyte cytokine profiles in children with autism and gastrointestinal symptoms | Journal of Neuroimmunology | 2006 | 170 |
| 29 | The Salmonella enterica Serotype Typhimurium lpf, bcf, stb, stc, std, and sth Fimbrial Operons Are Required for Intestinal Persistence in Mice | Infection and Immunity | 2005 | 169 |
| 30 | Comparative Analysis of Salmonella Genomes Identifies a Metabolic Network for Escalating Growth in the Inflamed Gut | MBio | 2014 | 165 |
| 31 | Effective CD4+ T-cell restoration in gut-associated lymphoid tissue of HIV-infected patients is associated with enhanced Th17 cells and polyfunctional HIV-specific T-cell responses | Mucosal Immunology | 2008 | 164 |
| 32 | The Gut Microbiota and Dysbiosis in Autism Spectrum Disorders | Current Neurology and Neuroscience Reports | 2018 | 155 |
| 33 | CsgA is a pathogen-associated molecular pattern of Salmonella enterica serotype Typhimurium that is recognized by Toll-like receptor 2 | Molecular Microbiology | 2005 | 153 |
| 34 | Dysbiosis in the inflamed intestine | Gut Microbes | 2014 | 153 |
| 35 | Interleukin-23 Orchestrates Mucosal Responses to Salmonella enterica Serotype Typhimurium in the Intestine | Infection and Immunity | 2009 | 152 |
| 36 | Paneth cell antimicrobial peptides: Topographical distribution and quantification in human gastrointestinal tissues | FEBS Letters | 2006 | 147 |
| 37 | Injection of Flagellin into the Host Cell Cytosol by Salmonella enterica Serotype Typhimurium | Journal of Biological Chemistry | 2007 | 145 |
| 38 | Ten questions concerning the microbiomes of buildings | Building and Environment | 2016 | 143 |
| 39 | Responses to Amyloids of Microbial and Host Origin Are Mediated through Toll-like Receptor 2 | Cell Host and Microbe | 2009 | 142 |
| 40 | Endogenous Enterobacteriaceae underlie variation in susceptibility to Salmonella infection | Nature Microbiology | 2019 | 141 |
| 41 | Immune Dysfunction in Autism: A Pathway to Treatment | Neurotherapeutics | 2010 | 138 |
| 42 | Toll-like receptors 1 and 2 cooperatively mediate immune responses to curli, a common amyloid from enterobacterial biofilms | Cellular Microbiology | 2010 | 138 |
| 43 | T Cells Help To Amplify Inflammatory Responses Induced bySalmonella entericaSerotype Typhimurium in the Intestinal Mucosa | Infection and Immunity | 2008 | 133 |
| 44 | Aspiring Antifungals: Review of Current Antifungal Pipeline Developments | Journal of Fungi (Basel, Switzerland) | 2020 | 133 |
| 45 | From bench to bedside: stealth of enteroinvasive pathogens | Nature Reviews Microbiology | 2008 | 132 |
| 46 | Host-mediated sugar oxidation promotes post-antibiotic pathogen expansion | Nature | 2016 | 132 |
| 47 | High-fat diet–induced colonocyte dysfunction escalates microbiota-derived trimethylamine N -oxide | Science | 2021 | 132 |
| 48 | The microbiome and gut homeostasis | Science | 2022 | 127 |
| 49 | The Vi-capsule prevents Toll-like receptor 4 recognition of Salmonella | Cellular Microbiology | 2008 | 122 |
| 50 | How To Become a Top Model: Impact of Animal Experimentation on Human Salmonella Disease Research | Infection and Immunity | 2011 | 121 |
