FAS Center for Systems Biology

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Top Articles

#	Title	Journal	Year	Citations
1	Diet rapidly and reproducibly alters the human gut microbiome	Nature	2014	7,592
2	Removing Noise From Pyrosequenced Amplicons	BMC Bioinformatics	2011	1,320
3	Mistranslation-Induced Protein Misfolding as a Dominant Constraint on Coding-Sequence Evolution	Cell	2008	949
4	Diet Dominates Host Genotype in Shaping the Murine Gut Microbiota	Cell Host and Microbe	2015	941
5	Robust Growth of Escherichia coli	Current Biology	2010	859
6	Conserved Shifts in the Gut Microbiota Due to Gastric Bypass Reduce Host Weight and Adiposity	Science Translational Medicine	2013	824
7	Xenobiotics Shape the Physiology and Gene Expression of the Active Human Gut Microbiome	Cell	2013	705
8	Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease	Proceedings of the National Academy of Sciences of the United States of America	2012	699
9	Genetic drift at expanding frontiers promotes gene segregation	Proceedings of the National Academy of Sciences of the United States of America	2007	601
10	Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations	Nature	2013	523
11	Cheese Rind Communities Provide Tractable Systems for In Situ and In Vitro Studies of Microbial Diversity	Cell	2014	500
12	A universal RNAi-based logic evaluator that operates in mammalian cells	Nature Biotechnology	2007	495
13	Pluripotency Factors in Embryonic Stem Cells Regulate Differentiation into Germ Layers	Cell	2011	487
14	The evolutionary consequences of erroneous protein synthesis	Nature Reviews Genetics	2009	437
15	optix Drives the Repeated Convergent Evolution of Butterfly Wing Pattern Mimicry	Science	2011	431
16	Rapid fucosylation of intestinal epithelium sustains host–commensal symbiosis in sickness	Nature	2014	428
17	Global epistasis makes adaptation predictable despite sequence-level stochasticity	Science	2014	405
18	FLO1 Is a Variable Green Beard Gene that Drives Biofilm-like Cooperation in Budding Yeast	Cell	2008	398
19	Reversible, Specific, Active Aggregates of Endogenous Proteins Assemble upon Heat Stress	Cell	2015	395
20	Active matter at the interface between materials science and cell biology	Nature Reviews Materials	2017	384
21	Regulation of astrocyte activation by glycolipids drives chronic CNS inflammation	Nature Medicine	2014	380
22	Systematic characterization of maturation time of fluorescent proteins in living cells	Nature Methods	2018	356
23	Unstable Tandem Repeats in Promoters Confer Transcriptional Evolvability	Science	2009	317
24	Phosphoinositide 3-Kinase Regulates Glycolysis through Mobilization of Aldolase from the Actin Cytoskeleton	Cell	2016	301
25	Spontaneous network formation among cooperative RNA replicators	Nature	2012	299
26	Sex speeds adaptation by altering the dynamics of molecular evolution	Nature	2016	299
27	Living with Noisy Genes: How Cells Function Reliably with Inherent Variability in Gene Expression	Annual Review of Biophysics and Biomolecular Structure	2007	296
28	Marked seasonal variation in the wild mouse gut microbiota	ISME Journal	2015	282
29	Fermented Foods as Experimentally Tractable Microbial Ecosystems	Cell	2015	278
30	Regulation of the bacterial cell cycle by an integrated genetic circuit	Nature	2006	257
31	Parsing the Interferon Transcriptional Network and Its Disease Associations	Cell	2016	250
32	Polymeric peptide pigments with sequence-encoded properties	Science	2017	244
33	Signal processing by the HOG MAP kinase pathway	Proceedings of the National Academy of Sciences of the United States of America	2008	236
34	Clinical Sequencing Uncovers Origins and Evolution of Lassa Virus	Cell	2015	230
35	Genome-wide Lineage-Specific Transcriptional Networks Underscore Ikaros-Dependent Lymphoid Priming in Hematopoietic Stem Cells	Immunity	2009	221
36	A human microprotein that interacts with the mRNA decapping complex	Nature Chemical Biology	2017	212
37	Genetic demixing and evolution in linear stepping stone models	Reviews of Modern Physics	2010	208
38	From Self-Assembled Vesicles to Protocells	Cold Spring Harbor Perspectives in Biology	2010	205
39	Functional Characterization of Bacteria Isolated from Ancient Arctic Soil Exposes Diverse Resistance Mechanisms to Modern Antibiotics	PLoS ONE	2015	202
40	Biocomputers: from test tubes to live cells	Molecular BioSystems	2009	190
41	Sucrose Utilization in Budding Yeast as a Model for the Origin of Undifferentiated Multicellularity	PLoS Biology	2011	189
42	Suppression by TFR cells leads to durable and selective inhibition of B cell effector function	Nature Immunology	2016	189
43	Physical manipulation of the Escherichia coli chromosome reveals its soft nature	Proceedings of the National Academy of Sciences of the United States of America	2012	187
44	Sequence-based estimation of minisatellite and microsatellite repeat variability	Genome Research	2007	180
45	Entropy as the driver of chromosome segregation	Nature Reviews Microbiology	2010	174
46	HSP90 affects the expression of genetic variation and developmental stability in quantitative traits	Proceedings of the National Academy of Sciences of the United States of America	2008	167
47	Strand-specific RNA sequencing in Plasmodium falciparum malaria identifies developmentally regulated long non-coding RNA and circular RNA	BMC Genomics	2015	160
48	Phenotypic Diversity and Altered Environmental Plasticity in Arabidopsis thaliana with Reduced Hsp90 Levels	PLoS ONE	2007	159
49	The let-7–Imp axis regulates ageing of the Drosophila testis stem-cell niche	Nature	2012	158
50	Selective sweeps in growing microbial colonies	Physical Biology	2012	150

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