| # | Title | Journal | Year | Citations |
|---|
| 1 | Simultaneous Emergence of Multidrug-ResistantCandida aurison 3 Continents Confirmed by Whole-Genome Sequencing and Epidemiological Analyses | Clinical Infectious Diseases | 2017 | 1,099 |
| 2 | A standardised method for interpreting the association between mutations and phenotypic drug resistance inMycobacterium tuberculosis | European Respiratory Journal | 2017 | 273 |
| 3 | Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis | Nature Genetics | 2018 | 271 |
| 4 | Population-based resistance of Mycobacterium tuberculosis isolates to pyrazinamide and fluoroquinolones: results from a multicountry surveillance project | Lancet Infectious Diseases, The | 2016 | 151 |
| 5 | Genetic sequencing for surveillance of drug resistance in tuberculosis in highly endemic countries: a multi-country population-based surveillance study | Lancet Infectious Diseases, The | 2018 | 119 |
| 6 | Integrating standardized whole genome sequence analysis with a global Mycobacterium tuberculosis antibiotic resistance knowledgebase | Scientific Reports | 2018 | 75 |
| 7 | Osteoid osteoma: Contemporary management | Orthopedic Reviews | 2018 | 64 |
| 8 | Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages | BMC Genomics | 2016 | 62 |
| 9 | Ceftriaxone-resistantSalmonellaTyphi Outbreak in Hyderabad City of Sindh, Pakistan: High Time for the Introduction of Typhoid Conjugate Vaccine | Clinical Infectious Diseases | 2019 | 60 |
| 10 | Unicameral bone cysts: Current concepts | Annals of Medicine and Surgery | 2018 | 54 |
| 11 | Resistome of carbapenem- and colistin-resistant Klebsiella pneumoniae clinical isolates | PLoS ONE | 2018 | 53 |
| 12 | Epidemiology of Shigella infections and diarrhea in the first two years of life using culture-independent diagnostics in 8 low-resource settings | PLoS Neglected Tropical Diseases | 2020 | 51 |
| 13 | Upregulated type I interferon responses in asymptomatic COVID-19 infection are associated with improved clinical outcome | Scientific Reports | 2021 | 47 |
| 14 | Non-tuberculous mycobacterial infections—A neglected and emerging problem | International Journal of Infectious Diseases | 2020 | 46 |
| 15 | Serious fungal infections in Pakistan | European Journal of Clinical Microbiology and Infectious Diseases | 2017 | 43 |
| 16 | Antimicrobial Resistance in Typhoidal Salmonella: Surveillance for Enteric Fever in Asia Project, 2016–2019 | Clinical Infectious Diseases | 2020 | 39 |
| 17 | A Retrospective Study of Laboratory-Based Enteric Fever Surveillance, Pakistan, 2012–2014 | Journal of Infectious Diseases | 2018 | 38 |
| 18 | Mucosal Genomics Implicate Lymphocyte Activation and Lipid Metabolism in Refractory Environmental Enteric Dysfunction | Gastroenterology | 2021 | 38 |
| 19 | Post tuberculosis treatment infectious complications | International Journal of Infectious Diseases | 2020 | 36 |
| 20 | Evaluation of Xpert MTB/RIF testing for rapid diagnosis of childhood pulmonary tuberculosis in children by Xpert MTB/RIF testing of stool samples in a low resource setting | BMC Research Notes | 2017 | 34 |
| 21 | Fourier transform infrared spectroscopy for analysis of kidney stones | Investigative and Clinical Urology | 2018 | 34 |
| 22 | Prognostic Value of Serum Procalcitonin in COVID-19 Patients: A Systematic Review | Indian Journal of Critical Care Medicine | 2021 | 34 |
| 23 | Incidence of typhoid and paratyphoid fever in Bangladesh, Nepal, and Pakistan: results of the Surveillance for Enteric Fever in Asia Project | The Lancet Global Health | 2022 | 33 |
| 24 | Methylation in Mycobacterium tuberculosis is lineage specific with associated mutations present globally | Scientific Reports | 2018 | 31 |
| 25 | What are the barriers to implementing national antimicrobial resistance action plans? A novel mixed-methods policy analysis in Pakistan | Health Policy and Planning | 2020 | 30 |
| 26 | Validation of Bedaquiline Phenotypic Drug Susceptibility Testing Methods and Breakpoints: a Multilaboratory, Multicountry Study | Journal of Clinical Microbiology | 2020 | 29 |
| 27 | Development of the Asia Pacific Consortium on Osteoporosis (APCO) Framework: clinical standards of care for the screening, diagnosis, and management of osteoporosis in the Asia-Pacific region | Osteoporosis International | 2021 | 28 |
| 28 | Case Series of Naegleria fowleri Primary Ameobic Meningoencephalitis from Karachi, Pakistan | American Journal of Tropical Medicine and Hygiene | 2017 | 28 |
| 29 | Comparison of risk factors and outcomes of Candida auris candidemia with non-Candida auris candidemia: A retrospective study from Pakistan | Medical Mycology | 2020 | 26 |
| 30 | Impact of COVID-19 on laboratory professionals-A descriptive cross sectional survey at a clinical chemistry laboratory in a developing country | Annals of Medicine and Surgery | 2020 | 25 |
| 31 | Clinical manifestations and outcomes of pulmonary aspergillosis: experience from Pakistan | BMJ Open Respiratory Research | 2016 | 23 |
| 32 | Antibiotic-Resistant Enteric Infections | Infectious Disease Clinics of North America | 2019 | 23 |
| 33 | Histologic grading of breast carcinoma: a multi-institution study of interobserver variation using virtual microscopy | Modern Pathology | 2021 | 23 |
| 34 | C. auris and non-C. auris candidemia in hospitalized adult and pediatric COVID-19 patients; single center data from Pakistan | Medical Mycology | 2021 | 23 |
| 35 | Human West Nile Virus Disease Outbreak in Pakistan, 2015–2016 | Frontiers in Public Health | 2018 | 22 |
| 36 | Osteoporosis and its perspective in Pakistan: A review of evidence and issues for addressing fragility fractures | Annals of Medicine and Surgery | 2018 | 21 |
| 37 | Expression of Androgen Receptor and Cancer Stem Cell Markers (CD44+/CD24− and ALDH1+): Prognostic Implications in Invasive Breast Cancer | Translational Oncology | 2018 | 20 |
| 38 | Efflux pump as alternate mechanism for drug resistance in Mycobacterium tuberculosis | Indian Journal of Tuberculosis | 2019 | 20 |
| 39 | Role of TNF α, IL-6 and CXCL10 in Dengue disease severity | Iranian Journal of Microbiology | 2018 | 20 |
| 40 | Primary hyperoxaluria in populations of Pakistan origin: results from a literature review and two major registries | Urolithiasis | 2018 | 18 |
| 41 | The Clinical Features of Co-circulating Dengue Viruses and the Absence of Dengue Hemorrhagic Fever in Pakistan | Frontiers in Public Health | 2020 | 18 |
| 42 | Vivax malaria and chloroquine resistance: a neglected disease as an emerging threat | Malaria Journal | 2015 | 17 |
| 43 | Chronic pulmonary mucormycosis: an emerging fungal infection in diabetes mellitus | Journal of Thoracic Disease | 2017 | 17 |
| 44 | Challenges amid COVID-19 times - Review of the changing practices in a clinical chemistry laboratory from a developing country | Annals of Medicine and Surgery | 2020 | 16 |
| 45 | Effect of 3 Days of Oral Azithromycin on Young Children With Acute Diarrhea in Low-Resource Settings | JAMA Network Open | 2021 | 16 |
| 46 | The many faces of glioblastoma: Pictorial review of atypical imaging features | Neuroradiology Journal | 2021 | 14 |
| 47 | Antimicrobial resistance among GLASS priority pathogens from Pakistan: 2006–2018 | BMC Infectious Diseases | 2021 | 14 |
| 48 | COVID-19 associated mucormycosis: a life-threatening complication in patients admitted with severe to critical COVID-19 from Pakistan | Clinical Microbiology and Infection | 2021 | 12 |
| 49 | Variants associated with Bedaquiline (BDQ) resistance identified in Rv0678 and efflux pump genes in Mycobacterium tuberculosis isolates from BDQ naïve TB patients in Pakistan | BMC Microbiology | 2022 | 12 |
| 50 | Comprehensive Molecular Profiling of Sinonasal Teratocarcinosarcoma Highlights Recurrent SMARCA4 Inactivation and CTNNB1 Mutations | American Journal of Surgical Pathology | 2023 | 12 |
