| # | Title | Journal | Year | Citations |
|---|
| 1 | Interactions Between the Microbiota and the Immune System | Science | 2012 | 3,422 |
| 2 | The Antibacterial Lectin RegIIIγ Promotes the Spatial Segregation of Microbiota and Host in the Intestine | Science | 2011 | 1,163 |
| 3 | Adenoma-linked barrier defects and microbial products drive IL-23/IL-17-mediated tumour growth | Nature | 2012 | 1,088 |
| 4 | Paneth cells directly sense gut commensals and maintain homeostasis at the intestinal host-microbial interface | Proceedings of the National Academy of Sciences of the United States of America | 2008 | 859 |
| 5 | Phosphatidylserine is a global immunosuppressive signal in efferocytosis, infectious disease, and cancer | Cell Death and Differentiation | 2016 | 506 |
| 6 | Activation of cyclic GMP-AMP synthase by self-DNA causes autoimmune diseases | Proceedings of the National Academy of Sciences of the United States of America | 2015 | 497 |
| 7 | TLR5-Mediated Sensing of Gut Microbiota Is Necessary for Antibody Responses to Seasonal Influenza Vaccination | Immunity | 2014 | 444 |
| 8 | Genome-wide CRISPR Screens Reveal Host Factors Critical for SARS-CoV-2 Infection | Cell | 2021 | 418 |
| 9 | Innate immunity to Toxoplasma gondii infection | Nature Reviews Immunology | 2014 | 378 |
| 10 | Precision editing of the gut microbiota ameliorates colitis | Nature | 2018 | 377 |
| 11 | Immune Responses to the Microbiota at the Intestinal Mucosal Surface | Immunity | 2009 | 369 |
| 12 | Optimal Germinal Center Responses Require a Multistage T Cell:B Cell Adhesion Process Involving Integrins, SLAM-Associated Protein, and CD84 | Immunity | 2010 | 341 |
| 13 | The genetics of complex autoimmune diseases: non-MHC susceptibility genes | Nature Immunology | 2001 | 338 |
| 14 | Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis | Nature Genetics | 2013 | 337 |
| 15 | Transancestral mapping and genetic load in systemic lupus erythematosus | Nature Communications | 2017 | 314 |
| 16 | A community computational challenge to predict the activity of pairs of compounds | Nature Biotechnology | 2014 | 264 |
| 17 | High Accuracy 3D Quantum Dot Tracking with Multifocal Plane Microscopy for the Study of Fast Intracellular Dynamics in Live Cells | Biophysical Journal | 2008 | 263 |
| 18 | γδ intraepithelial lymphocytes are essential mediators of host–microbial homeostasis at the intestinal mucosal surface | Proceedings of the National Academy of Sciences of the United States of America | 2011 | 262 |
| 19 | Resident viruses and their interactions with the immune system | Nature Immunology | 2013 | 247 |
| 20 | Microbial Respiration and Formate Oxidation as Metabolic Signatures of Inflammation-Associated Dysbiosis | Cell Host and Microbe | 2017 | 239 |
| 21 | Identification of functionally distinct fibro-inflammatory and adipogenic stromal subpopulations in visceral adipose tissue of adult mice | ELife | 2018 | 227 |
| 22 | Toxoplasma gondii Rhoptry Kinase ROP16 Activates STAT3 and STAT6 Resulting in Cytokine Inhibition and Arginase-1-Dependent Growth Control | PLoS Pathogens | 2011 | 226 |
| 23 | Inhibitory receptors bind ANGPTLs and support blood stem cells and leukaemia development | Nature | 2012 | 223 |
| 24 | Proteobacteria-specific IgA regulates maturation of the intestinal microbiota | Gut Microbes | 2014 | 215 |
| 25 | Therapeutic Helminth Infection of Macaques with Idiopathic Chronic Diarrhea Alters the Inflammatory Signature and Mucosal Microbiota of the Colon | PLoS Pathogens | 2012 | 206 |
| 26 | The intestinal microbiota programs diurnal rhythms in host metabolism through histone deacetylase 3 | Science | 2019 | 202 |
| 27 | A composite bacteriophage alters colonization by an intestinal commensal bacterium | Proceedings of the National Academy of Sciences of the United States of America | 2012 | 198 |
| 28 | The basic leucine zipper transcription factor NFIL3 directs the development of a common innate lymphoid cell precursor | ELife | 2014 | 191 |
| 29 | Gut Commensal Bacteria Direct a Protective Immune Response against Toxoplasma gondii | Cell Host and Microbe | 2009 | 190 |
| 30 | A Metabolic Function for Phospholipid and Histone Methylation | Molecular Cell | 2017 | 189 |
| 31 | Do symbiotic bacteria subvert host immunity? | Nature Reviews Microbiology | 2009 | 183 |
| 32 | Evaluation of methods to purify virus-like particles for metagenomic sequencing of intestinal viromes | BMC Genomics | 2015 | 183 |
| 33 | STING-mediated disruption of calcium homeostasis chronically activates ER stress and primes T cell death | Journal of Experimental Medicine | 2019 | 182 |
| 34 | Conditional deletion of the MHC class I-related receptor FcRn reveals the sites of IgG homeostasis in mice | Proceedings of the National Academy of Sciences of the United States of America | 2009 | 179 |
| 35 | Interferon-Independent Activities of Mammalian STING Mediate Antiviral Response and Tumor Immune Evasion | Immunity | 2020 | 179 |
| 36 | Toll-like receptors, signaling adapters and regulation of the pro-inflammatory response by PI3K | Cell Cycle | 2012 | 177 |
| 37 | Reciprocal Interactions between Commensal Bacteria and γδ Intraepithelial Lymphocytes during Mucosal Injury | Journal of Immunology | 2009 | 175 |
| 38 | Parasite-induced TH1 cells and intestinal dysbiosis cooperate in IFN-γ-dependent elimination of Paneth cells | Nature Immunology | 2013 | 170 |
| 39 | Dietary simple sugars alter microbial ecology in the gut and promote colitis in mice | Science Translational Medicine | 2020 | 163 |
| 40 | Identification of IRF8, TMEM39A, and IKZF3-ZPBP2 as Susceptibility Loci for Systemic Lupus Erythematosus in a Large-Scale Multiracial Replication Study | American Journal of Human Genetics | 2012 | 161 |
| 41 | The Antibiotic Resistance Arrow of Time: Efflux Pump Induction Is a General First Step in the Evolution of Mycobacterial Drug Resistance | Antimicrobial Agents and Chemotherapy | 2012 | 158 |
| 42 | Making Mouse Models That Reflect Human Immune Responses | Trends in Immunology | 2017 | 156 |
| 43 | STING-associated vasculopathy develops independently of IRF3 in mice | Journal of Experimental Medicine | 2017 | 155 |
| 44 | Dysbiosis-Associated Change in Host Metabolism Generates Lactate to Support Salmonella Growth | Cell Host and Microbe | 2018 | 154 |
| 45 | Quantitative study of single molecule location estimation techniques | Optics Express | 2009 | 151 |
| 46 | Yaa autoimmune phenotypes are conferred by overexpression of TLR7 | European Journal of Immunology | 2008 | 150 |
| 47 | Chapter 4 Multitasking by Exploitation of Intracellular Transport Functions | Advances in Immunology | 2009 | 148 |
| 48 | Role for B-cell adapter for PI3K (BCAP) as a signaling adapter linking Toll-like receptors (TLRs) to serine/threonine kinases PI3K/Akt | Proceedings of the National Academy of Sciences of the United States of America | 2012 | 148 |
| 49 | Elucidation of intracellular recycling pathways leading to exocytosis of the Fc receptor, FcRn, by using multifocal plane microscopy | Proceedings of the National Academy of Sciences of the United States of America | 2007 | 147 |
| 50 | Innate Control of Adaptive Immunity: Beyond the Three-Signal Paradigm | Journal of Immunology | 2017 | 145 |
