| # | Title | Journal | Year | Citations |
|---|
| 1 | Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88 | Nature Biotechnology | 2007 | 1,047 |
| 2 | The genomic sequence of the Chinese hamster ovary (CHO)-K1 cell line | Nature Biotechnology | 2011 | 699 |
| 3 | Uncovering transcriptional regulation of metabolism by using metabolic network topology | Proceedings of the National Academy of Sciences of the United States of America | 2005 | 553 |
| 4 | A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology | Nature Biotechnology | 2008 | 530 |
| 5 | Mass spectrometry in metabolome analysis | Mass Spectrometry Reviews | 2005 | 513 |
| 6 | Identity and effects of quorum-sensing inhibitors produced by Penicillium species | Microbiology (United Kingdom) | 2005 | 425 |
| 7 | Phosphoproteome Analysis of E. coli Reveals Evolutionary Conservation of Bacterial Ser/Thr/Tyr Phosphorylation | Molecular and Cellular Proteomics | 2008 | 385 |
| 8 | Evolutionary programming as a platform for in silico metabolic engineering | BMC Bioinformatics | 2005 | 374 |
| 9 | The Serine/Threonine/Tyrosine Phosphoproteome of the Model Bacterium Bacillus subtilis | Molecular and Cellular Proteomics | 2007 | 359 |
| 10 | Deleting the para-nitrophenyl phosphatase (pNPPase), PHO13, in recombinant Saccharomyces cerevisiae improves growth and ethanol production on d-xylose | Metabolic Engineering | 2008 | 332 |
| 11 | Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88 | Genome Research | 2011 | 329 |
| 12 | OptFlux: an open-source software platform for in silico metabolic engineering | BMC Systems Biology | 2010 | 321 |
| 13 | Fumonisin B2 Production by Aspergillus niger | Journal of Agricultural and Food Chemistry | 2007 | 319 |
| 14 | Protein purification using magnetic adsorbent particles | Applied Microbiology and Biotechnology | 2006 | 313 |
| 15 | Polyphasic taxonomy of the genus Talaromyces | Studies in Mycology | 2014 | 305 |
| 16 | Polyphasic taxonomy of Aspergillus fumigatus and related species | Mycologia | 2005 | 302 |
| 17 | Increasing NADH oxidation reduces overflow metabolism in Saccharomyces cerevisiae | Proceedings of the National Academy of Sciences of the United States of America | 2007 | 302 |
| 18 | LaeA, a Regulator of Morphogenetic Fungal Virulence Factors | Eukaryotic Cell | 2005 | 298 |
| 19 | Associations between Fungal Species and Water-Damaged Building Materials | Applied and Environmental Microbiology | 2011 | 288 |
| 20 | Two new aflatoxin producing species, and an overview of Aspergillus section Flavi | Studies in Mycology | 2011 | 274 |
| 21 | Review of secondary metabolites and mycotoxins from the Aspergillus niger group | Analytical and Bioanalytical Chemistry | 2009 | 266 |
| 22 | Microbial production of indolylglucosinolate through engineering of a multi-gene pathway in a versatile yeast expression platform | Metabolic Engineering | 2012 | 244 |
| 23 | New and revisited species in Aspergillus section Nigri | Studies in Mycology | 2011 | 235 |
| 24 | Modeling Lactococcus lactis using a genome-scale flux model | BMC Microbiology | 2005 | 231 |
| 25 | Novel Neosartorya species isolated from soil in Korea | International Journal of Systematic and Evolutionary Microbiology | 2006 | 230 |
| 26 | Improved vanillin production in baker's yeast through in silico design | Microbial Cell Factories | 2010 | 226 |
| 27 | Dereplication of Microbial Natural Products by LC-DAD-TOFMS | Journal of Natural Products | 2011 | 220 |
| 28 | Genome-scale analysis of Streptomyces coelicolor A3(2) metabolism | Genome Research | 2005 | 215 |
| 29 | Dynamic control of gene expression in Saccharomyces cerevisiae engineered for the production of plant sesquitepene α-santalene in a fed-batch mode | Metabolic Engineering | 2012 | 215 |
| 30 | Accurate prediction of secondary metabolite gene clusters in filamentous fungi | Proceedings of the National Academy of Sciences of the United States of America | 2013 | 211 |
| 31 | Growth-rate regulated genes have profound impact on interpretation of transcriptome profiling in Saccharomyces cerevisiae | Genome Biology | 2006 | 205 |
| 32 | The next wave in metabolome analysis | Trends in Biotechnology | 2005 | 204 |
| 33 | Comparison of SHF and SSF processes from steam‐exploded wheat straw for ethanol production by xylose‐fermenting and robust glucose‐fermenting Saccharomyces cerevisiae strains | Biotechnology and Bioengineering | 2008 | 204 |
| 34 | Integration of gene expression data into genome-scale metabolic models | Metabolic Engineering | 2004 | 198 |
| 35 | Phenotypic taxonomy and metabolite profiling in microbial drug discovery | Natural Product Reports | 2005 | 194 |
| 36 | Diversion of Flux toward Sesquiterpene Production in Saccharomyces cerevisiae by Fusion of Host and Heterologous Enzymes | Applied and Environmental Microbiology | 2011 | 194 |
| 37 | Metabolic model integration of the bibliome, genome, metabolome and reactome of Aspergillus niger | Molecular Systems Biology | 2008 | 190 |
| 38 | Increased isobutanol production in Saccharomyces cerevisiae by overexpression of genes in valine metabolism | Biotechnology for Biofuels | 2011 | 184 |
| 39 | Taxonomic comparison of three different groups of aflatoxin producers and a new efficient producer of aflatoxin B1, sterigmatocystin and 3-O-methylsterigmatocystin, Aspergillus rambellii sp. nov. | Systematic and Applied Microbiology | 2005 | 183 |
| 40 | Polyphasic taxonomy ofAspergillus fumigatusand related species | Mycologia | 2005 | 181 |
| 41 | Good modeling practice for PAT applications: Propagation of input uncertainty and sensitivity analysis | Biotechnology Progress | 2009 | 180 |
| 42 | Tyrosine phosphorylation: an emerging regulatory device of bacterial physiology | Trends in Biochemical Sciences | 2007 | 176 |
| 43 | Metabolite profiling of fungi and yeast: from phenotype to metabolome by MS and informatics | Journal of Experimental Botany | 2005 | 172 |
| 44 | Fumonisin and Ochratoxin Production in Industrial Aspergillus niger Strains | PLoS ONE | 2011 | 172 |
| 45 | ASPERGILLUS LUCHUENSIS, AN INDUSTRIALLY IMPORTANT BLACK ASPERGILLUS IN EAST ASIA | PLoS ONE | 2013 | 167 |
| 46 | Multi-mycotoxin analysis of maize silage by LC-MS/MS | Analytical and Bioanalytical Chemistry | 2010 | 166 |
| 47 | In silico genome‐scale reconstruction and validation of the Corynebacterium glutamicum metabolic network | Biotechnology and Bioengineering | 2009 | 162 |
| 48 | Linking high-resolution metabolic flux phenotypes and transcriptional regulation in yeast modulated by the global regulator Gcn4p | Proceedings of the National Academy of Sciences of the United States of America | 2009 | 154 |
| 49 | Fusarium spp. associated with rice Bakanae: ecology, genetic diversity, pathogenicity and toxigenicity | Environmental Microbiology | 2010 | 153 |
| 50 | A trispeciesAspergillusmicroarray: Comparative transcriptomics of threeAspergillusspecies | Proceedings of the National Academy of Sciences of the United States of America | 2008 | 152 |
