| # | Title | Journal | Year | Citations |
|---|
| 1 | Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB | Applied and Environmental Microbiology | 2006 | 9,859 |
| 2 | An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea | ISME Journal | 2012 | 4,581 |
| 3 | Induction of Intestinal Th17 Cells by Segmented Filamentous Bacteria | Cell | 2009 | 3,818 |
| 4 | NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes | Nucleic Acids Research | 2006 | 918 |
| 5 | Chronic kidney disease alters intestinal microbial flora | Kidney International | 2013 | 828 |
| 6 | Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications | Nature Biotechnology | 2011 | 608 |
| 7 | Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys | ISME Journal | 2012 | 537 |
| 8 | Expansion of Urease- and Uricase-Containing, Indole- and p-Cresol-Forming and Contraction of Short-Chain Fatty Acid-Producing Intestinal Microbiota in ESRD | American Journal of Nephrology | 2014 | 478 |
| 9 | High-Density Universal 16S rRNA Microarray Analysis Reveals Broader Diversity than Typical Clone Library When Sampling the Environment | Microbial Ecology | 2007 | 416 |
| 10 | Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata | ISME Journal | 2009 | 364 |
| 11 | Integrating microbial ecology into ecosystem models: challenges and priorities | Biogeochemistry | 2012 | 206 |
| 12 | IR spectroscopic characteristics of cell cycle and cell death probed by synchrotron radiation based Fourier transform IR spectromicroscopy | Biopolymers | 2000 | 205 |
| 13 | Man's best friend? The effect of pet ownership on house dust microbial communities | Journal of Allergy and Clinical Immunology | 2010 | 205 |
| 14 | Complete Genome Sequence of Yersinia pestis Strains Antiqua and Nepal516: Evidence of Gene Reduction in an Emerging Pathogen | Journal of Bacteriology | 2006 | 174 |
| 15 | Genome Differences That Distinguish Bacillus anthracis from Bacillus cereus and Bacillus thuringiensis | Applied and Environmental Microbiology | 2003 | 167 |
| 16 | Long term diurnal variations in contaminant removal in high rate ponds treating urban wastewater | Bioresource Technology | 2006 | 167 |
| 17 | Animal-to-Animal Variation in Fecal Microbial Diversity among Beef Cattle | Applied and Environmental Microbiology | 2010 | 146 |
| 18 | High-throughput identification of transcription start sites, conserved promoter motifs and predicted regulons | Nature Biotechnology | 2007 | 145 |
| 19 | Identification of Genes Associated with Survival of Salmonella enterica Serovar Enteritidis in Chicken Egg Albumen | Applied and Environmental Microbiology | 2006 | 119 |
| 20 | Molecular bacterial community analysis of clean rooms where spacecraft are assembled | FEMS Microbiology Ecology | 2007 | 113 |
| 21 | Rapid quantification and taxonomic classification of environmental DNA from both prokaryotic and eukaryotic origins using a microarray | FEMS Microbiology Letters | 2005 | 103 |
| 22 | Comprehensive aligned sequence construction for automated design of effective probes (CASCADE-P) using 16S rDNA | Bioinformatics | 2003 | 101 |
| 23 | Coral transcriptome and bacterial community profiles reveal distinct Yellow Band Disease states in Orbicella faveolata | ISME Journal | 2014 | 80 |
| 24 | Synchrotron infrared spectromicroscopy as a novel bioanalytical microprobe for individual living cells: cytotoxicity considerations | Journal of Biomedical Optics | 2002 | 77 |
| 25 | Effect of Chromium(VI) Action on Arthrobacter oxydans | Current Microbiology | 2004 | 75 |
| 26 | The value of microbial diversity | Current Opinion in Microbiology | 1998 | 59 |
| 27 | Tackling the minority: sulfate-reducing bacteria in an archaea-dominated subsurface biofilm | ISME Journal | 2013 | 57 |
| 28 | Flux Analysis of Central Metabolic Pathways in Geobacter metallireducens during Reduction of Soluble Fe(III)-Nitrilotriacetic Acid | Applied and Environmental Microbiology | 2007 | 55 |
| 29 | Prokaryotic community profiles at different operational stages of a Greek solar saltern | Research in Microbiology | 2008 | 52 |
| 30 | Diversity of Anaerobic Microbes in Spacecraft Assembly Clean Rooms | Applied and Environmental Microbiology | 2010 | 50 |
| 31 | Evidence for Selective Bacterial Community Structuring in the Freshwater Sponge Ephydatia fluviatilis | Microbial Ecology | 2013 | 44 |
| 32 | Low-Dose Responses to 2,3,7,8-Tetrachlorodibenzo-p-dioxin in Single Living Human Cells Measured by Synchrotron Infrared Spectromicroscopy | Environmental Science & Technology | 2000 | 43 |
| 33 | Supervised classification of microbiota mitigates mislabeling errors | ISME Journal | 2011 | 42 |
| 34 | Use of gene probes to assess the impact and effectiveness of aerobic in situ bioremediation of TCE | Archives of Microbiology | 2009 | 38 |
| 35 | Developing a biosensor for estrogens in water samples: Study of the real-time response of live cells of the estrogen-sensitive yeast strain RMY/ER-ERE using fluorescence microscopy | Biosensors and Bioelectronics | 2006 | 32 |
| 36 | Coupling Genetic and Chemical Microbiome Profiling Reveals Heterogeneity of Archaeome and Bacteriome in Subsurface Biofilms That Are Dominated by the Same Archaeal Species | PLoS ONE | 2014 | 28 |
| 37 | Integrated Microbial Survey Analysis of Prokaryotic Communities for the PhyloChip Microarray | Applied and Environmental Microbiology | 2010 | 24 |
| 38 | Effect of chromate action on morphology of basalt-inhabiting bacteria | Materials Science and Engineering C | 2006 | 23 |
| 39 | Chromium(V) complexes generated in Arthrobacter oxydans by simulation analysis of EPR spectra | Journal of Inorganic Biochemistry | 2006 | 23 |
| 40 | Bacterial Community Analysis of Beef Cattle Feedlots Reveals That Pen Surface Is Distinct from Feces | Foodborne Pathogens and Disease | 2011 | 23 |
| 41 | Initiation of MTBE Biotreatment in Fluidized-Bed Bioreactors | Journal of Environmental Engineering, ASCE | 2002 | 20 |
| 42 | Carbon isotope fractionation by methane-oxidizing bacteria in tropical rain forest soils | Journal of Geophysical Research | 2006 | 19 |
| 43 | ENAA studies of chromium uptake by Arthrobacter oxydans | Journal of Radioanalytical and Nuclear Chemistry | 2004 | 13 |
| 44 | Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool | BMC Bioinformatics | 2007 | 9 |
| 45 | Decomposition of Cr(V)-diols to Cr(III) Complexes by Arthrobacter oxydans | Microbial Ecology | 2009 | 7 |
| 46 | Formation of Cr(V) and Cr(III) inArthrobacter oxydans Exposed to High Concentrations of Cr(VI) | Microbial Ecology | 0 | 4 |
| 47 | Isolation of bacteria of the genus Paenibacillus from soil and springs of the Valley of Geysers (Kamchatka) | Microbiology | 2010 | 3 |
| 48 | IR spectroscopic characteristics of cell cycle and cell death probed by synchrotron radiation based Fourier transform IR spectromicroscopy | Biopolymers | 2000 | 3 |
| 49 | Genomic and Phenotypic Analyses of Microorganisms Isolated from the Sediments of Lake Baikal | Microbiology | 2005 | 2 |
| 50 | Environmental Biotechnology. Second Edition. By Alan Scragg. Oxford and New York: Oxford University Press. $54.50 (paper). viii + 447 p; ill.; index. ISBN: 0‐19‐926867‐3. 2004. | Quarterly Review of Biology | 2006 | 0 |
