Department of Biology

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citing journals

Top Articles

#	Title	Journal	Year	Citations
1	Guidelines for the use and interpretation of assays for monitoring autophagy	Autophagy	2012	3,122
2	Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)¹	Autophagy	2021	1,430
3	Anti-inflammatory cyclopentenone prostaglandins are direct inhibitors of IκB kinase	Nature	2000	1,283
4	MINT, the molecular interaction database: 2012 update	Nucleic Acids Research	2012	917
5	Essential versus accessory aspects of cell death: recommendations of the NCCD 2015	Cell Death and Differentiation	2015	811
6	MINT: the Molecular INTeraction database	Nucleic Acids Research	2007	795
7	A Combined Experimental and Computational Strategy to Define Protein Interaction Networks for Peptide Recognition Modules	Science	2002	668
8	MINT: a Molecular INTeraction database	FEBS Letters	2002	665
9	mTOR inhibits autophagy by controlling ULK1 ubiquitylation, self-association and function through AMBRA1 and TRAF6	Nature Cell Biology	2013	662
10	Protein interaction data curation: the International Molecular Exchange (IMEx) consortium	Nature Methods	2012	500
11	Beringian Standstill and Spread of Native American Founders	PLoS ONE	2007	499
12	Heat shock factors and the control of the stress response	Biochemical Pharmacology	2000	489
13	Sustained proliferation in cancer: Mechanisms and novel therapeutic targets	Seminars in Cancer Biology	2015	468
14	MINT, the molecular interaction database: 2009 update	Nucleic Acids Research	2010	458
15	Apoptosis-inducing factor (AIF): key to the conserved caspase-independent pathways of cell death?	Journal of Cell Science	2002	452
16	Neuronal caspase-3 signaling: not only cell death	Cell Death and Differentiation	2010	368
17	Cell signalling and the glutathione redox system	Biochemical Pharmacology	2002	326
18	Inhibition of the c-Abl–TAp63 pathway protects mouse oocytes from chemotherapy-induced death	Nature Medicine	2009	307
19	KinomeXplorer: an integrated platform for kinome biology studies	Nature Methods	2014	304
20	Peroxisome Proliferator-activated Receptor γ Co-activator 1α (PGC-1α) and Sirtuin 1 (SIRT1) Reside in Mitochondria	Journal of Biological Chemistry	2010	294
21	AMBRA1 is able to induce mitophagy via LC3 binding, regardless of PARKIN and p62/SQSTM1	Cell Death and Differentiation	2015	294
22	mentha: a resource for browsing integrated protein-interaction networks	Nature Methods	2013	291
23	The ubiquitin–protein ligase Itch regulates p73 stability	EMBO Journal	2005	286
24	Zinc Sequestration by the Neutrophil Protein Calprotectin Enhances Salmonella Growth in the Inflamed Gut	Cell Host and Microbe	2012	286
25	PSICQUIC and PSISCORE: accessing and scoring molecular interactions	Nature Methods	2011	274
26	Thyroid Hormones as Modulators of Immune Activities at the Cellular Level	Thyroid	2011	267
27	Microfluidic-enhanced 3D bioprinting of aligned myoblast-laden hydrogels leads to functionally organized myofibers in vitro and in vivo	Biomaterials	2017	252
28	Autophagy induction impairs migration and invasion by reversing EMT in glioblastoma cells	Molecular Oncology	2015	245
29	SIGNOR: a database of causal relationships between biological entities	Nucleic Acids Research	2016	243
30	The S100B story: from biomarker to active factor in neural injury	Journal of Neurochemistry	2019	242
31	Role of Nitric Oxide Synthases in Parkinson’s Disease: A Review on the Antioxidant and Anti-inflammatory Activity of Polyphenols	Neurochemical Research	2008	231
32	Autophagy in the CNS and Periphery Coordinate Lipophagy and Lipolysis in the Brown Adipose Tissue and Liver	Cell Metabolism	2016	230
33	High-Affinity Zn²⁺Uptake System ZnuABC Is Required for Bacterial Zinc Homeostasis in Intracellular Environments and Contributes to the Virulence ofSalmonella enterica	Infection and Immunity	2007	222
34	A global analysis of Y-chromosomal haplotype diversity for 23 STR loci	Forensic Science International: Genetics	2014	214
35	‘Tissue’ transglutaminase ablation reduces neuronal death and prolongs survival in a mouse model of Huntington's disease	Cell Death and Differentiation	2002	212
36	Thiazolides, a New Class of Anti-influenza Molecules Targeting Viral Hemagglutinin at the Post-translational Level	Journal of Biological Chemistry	2009	208
37	Neuroprotection of kaempferol by autophagy in models of rotenone-mediated acute toxicity: possible implications for Parkinson's disease	Neurobiology of Aging	2012	202
38	A Path Toward Precision Medicine for Neuroinflammatory Mechanisms in Alzheimer's Disease	Frontiers in Immunology	2020	201
39	AMBRA1 links autophagy to cell proliferation and tumorigenesis by promoting c-Myc dephosphorylation and degradation	Nature Cell Biology	2015	200
40	HUWE1 E3 ligase promotes PINK1/PARKIN-independent mitophagy by regulating AMBRA1 activation via IKKα	Nature Communications	2018	198
41	Expression of a Cu,Zn superoxide dismutase typical of familial amyotrophic lateral sclerosis induces mitochondrial alteration and increase of cytosolic Ca²⁺ concentration in transfected neuroblastoma SH‐SY5Y cells	FEBS Letters	1997	195
42	Complement C3 vs C5 inhibition in severe COVID-19: Early clinical findings reveal differential biological efficacy	Clinical Immunology	2020	191
43	Bottom trawl fishing footprints on the world’s continental shelves	Proceedings of the National Academy of Sciences of the United States of America	2018	189
44	Iron-Starvation-Induced Mitophagy Mediates Lifespan Extension upon Mitochondrial Stress in C. elegans	Current Biology	2015	188
45	Benefits from Dietary Polyphenols for Brain Aging and Alzheimer’s Disease	Neurochemical Research	2008	187
46	Oxidative stress and antioxidant therapy in cystic fibrosis	Biochimica Et Biophysica Acta - Molecular Basis of Disease	2012	186
47	The human phosphatase interactome: An intricate family portrait	FEBS Letters	2012	184
48	VirusMINT: a viral protein interaction database	Nucleic Acids Research	2009	180
49	Redox implications of AMPK-mediated signal transduction beyond energetic clues	Journal of Cell Science	2012	176
50	Bayesian Modeling of the Yeast SH3 Domain Interactome Predicts Spatiotemporal Dynamics of Endocytosis Proteins	PLoS Biology	2009	172

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