| # | Title | Journal | Year | Citations |
|---|
| 1 | PIC: Protein Interactions Calculator | Nucleic Acids Research | 2007 | 802 |
| 2 | Design of Folded Peptides | Chemical Reviews | 2001 | 641 |
| 3 | A novel method for prokaryotic promoter prediction based on DNA stability | BMC Bioinformatics | 2005 | 462 |
| 4 | Triclosan offers protection against blood stages of malaria by inhibiting enoyl-ACP reductase of Plasmodium falciparum | Nature Medicine | 2001 | 404 |
| 5 | Hairpin and parallel quartet structures for telomeric sequences | Nucleic Acids Research | 1992 | 396 |
| 6 | A Network Representation of Protein Structures: Implications for Protein Stability | Biophysical Journal | 2005 | 385 |
| 7 | Revisiting the stringent response, ppGpp and starvation signaling | Current Opinion in Microbiology | 2001 | 347 |
| 8 | The Stereochemistry of Peptides Containing α-Aminoisobutyric Aci | Critical Reviews in Biochemistry | 1984 | 332 |
| 9 | N-linked oligosaccharides as outfitters for glycoprotein folding, form and function | Trends in Biochemical Sciences | 2006 | 270 |
| 10 | Structure and stability of human telomeric sequence | Journal of Biological Chemistry | 1994 | 260 |
| 11 | Aromatic clusters: a determinant of thermal stability of thermophilic proteins | Protein Engineering, Design and Selection | 2000 | 248 |
| 12 | Identification of side-chain clusters in protein structures by a graph spectral method 1 1Edited by J. M. Thornton | Journal of Molecular Biology | 1999 | 246 |
| 13 | Elucidation of Factors Responsible for Enhanced Thermal Stability of Proteins: A Structural Genomics Based Study† | Biochemistry | 2002 | 239 |
| 14 | A novel mode of carbohydrate recognition in jacalin, a Moraceae plant lectin with a β-prism fold | Nature Structural Biology | 1996 | 224 |
| 15 | Lectins | Current Opinion in Structural Biology | 1999 | 224 |
| 16 | A study of communication pathways in methionyl- tRNA synthetase by molecular dynamics simulations and structure network analysis | Proceedings of the National Academy of Sciences of the United States of America | 2007 | 222 |
| 17 | Residue depth: a novel parameter for the analysis of protein structure and stability | Structure | 1999 | 208 |
| 18 | Design of an HA2-based Escherichia coli expressed influenza immunogen that protects mice from pathogenic challenge | Proceedings of the National Academy of Sciences of the United States of America | 2010 | 201 |
| 19 | An explanation for the rare occurrence of cis peptide units in proteins and polypeptides | Journal of Molecular Biology | 1976 | 198 |
| 20 | Analyses of carbohydrate recognition by legume lectins: size of the combining site loops and their primary specificity | Journal of Molecular Biology | 1997 | 196 |
| 21 | Interaction Energy Based Protein Structure Networks | Biophysical Journal | 2010 | 196 |
| 22 | Specific Inhibition of p300-HAT Alters Global Gene Expression and Represses HIV Replication | Chemistry and Biology | 2007 | 183 |
| 23 | Diacetylenic Lipid Tubules: Experimental Evidence for a Chiral Molecular Architecture | Science | 1994 | 175 |
| 24 | Conformation, Protein-Carbohydrate Interactions and a Novel Subunit Association in the Refined Structure of Peanut Lectin-Lactose Complex | Journal of Molecular Biology | 1996 | 174 |
| 25 | A hypothesis on the role of hydroxyproline in stabilizing collagen structure | Biochimica Et Biophysica Acta (BBA) - Protein Structure | 1973 | 173 |
| 26 | Stereochemical modeling of disulfide bridges. Criteria for introduction into proteins by site-directed mutagenesis | Protein Engineering, Design and Selection | 1989 | 171 |
| 27 | Beta-hairpins in proteins revisited: lessons for de novo design | Protein Engineering, Design and Selection | 1997 | 171 |
| 28 | A model for the interaction of trifluoroethanol with peptides and proteins | International Journal of Peptide and Protein Research | 1996 | 167 |
| 29 | Molecular and clinical correlation in five Indian families with spinocerebellar ataxia 12 | Annals of Neurology | 2001 | 166 |
| 30 | Influenza hemagglutinin stem-fragment immunogen elicits broadly neutralizing antibodies and confers heterologous protection | Proceedings of the National Academy of Sciences of the United States of America | 2014 | 165 |
| 31 | Protein thermal stability: insights from atomic displacement parameters (B values) | Protein Engineering, Design and Selection | 2000 | 164 |
| 32 | Conformations of disulfide bridges in proteins | International Journal of Peptide and Protein Research | 1990 | 164 |
| 33 | A micrometre-sized heat engine operating between bacterial reservoirs | Nature Physics | 2016 | 162 |
| 34 | Stereochemical Control of Peptide Folding | Bioorganic and Medicinal Chemistry | 1999 | 161 |
| 35 | Collagen Structure: The Madras Triple Helix and the Current Scenario | IUBMB Life | 2005 | 160 |
| 36 | Intra and Inter-Molecular Communications Through Protein Structure Network | Current Protein and Peptide Science | 2009 | 159 |
| 37 | Elucidation of determinants of protein stability through genome sequence analysis | FEBS Letters | 2000 | 158 |
| 38 | HELANAL: A Program to Characterize Helix Geometry in Proteins | Journal of Biomolecular Structure and Dynamics | 2000 | 157 |
| 39 | Titration calorimetric studies to elucidate the specificity of the interactions of polymyxin B with lipopolysaccharides and lipid A | Biochemical Journal | 1996 | 153 |
| 40 | PROTEIN STRUCTURE: INSIGHTS FROM GRAPH THEORY | Journal of Theoretical and Computational Chemistry | 2002 | 153 |
| 41 | AN ANALYSIS OF SIDE‐CHAIN CONFORMATION IN PROTEINS* | International Journal of Peptide and Protein Research | 1979 | 148 |
| 42 | A genomic perspective of protein kinases in Plasmodium falciparum | Proteins: Structure, Function and Bioinformatics | 2004 | 147 |
| 43 | ppGpp: stringent response and survival | Journal of Microbiology | 2006 | 142 |
| 44 | Role of glycosylation in nucleating protein folding and stability | Biochemical Journal | 2017 | 136 |
| 45 | Conformation of the LL and LD hairpin bends with internal hydrogen bonds in proteins and peptides | Biochimica Et Biophysica Acta (BBA) - Protein Structure | 1973 | 135 |
| 46 | Triosephosphate isomerase from Plasmodium falciparum:. the crystal structure provides insights into antimalarial drug design | Structure | 1997 | 135 |
| 47 | The Crystal Structure of a Quercetin 2,3-Dioxygenase fromBacillus subtilisSuggests Modulation of Enzyme Activity by a Change in the Metal Ion at the Active Site(s)† | Biochemistry | 2005 | 135 |
| 48 | Structural Modes of Stabilization of Permissive Phosphorylation Sites in Protein Kinases: Distinct Strategies in Ser/Thr and Tyr Kinases | Journal of Molecular Biology | 2004 | 134 |
| 49 | Isolation, purification and characterization of an antifungal molecule produced by Bacillus licheniformis BC98, and its effect on phytopathogen Magnaporthe grisea | Journal of Applied Microbiology | 2007 | 134 |
| 50 | Ribosome inactivating proteins and apoptosis | FEBS Letters | 2005 | 133 |
