Sealy Center for Structural Biology and Molecular Biophysics

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#	Title	Journal	Year	Citations
1	Brain-Region-Specific Organoids Using Mini-bioreactors for Modeling ZIKV Exposure	Cell	2016	1,680
2	A single mutation in the prM protein of Zika virus contributes to fetal microcephaly	Science	2017	399
3	Biomimetic proteolipid vesicles for targeting inflamed tissues	Nature Materials	2016	327
4	Osmolyte effects on protein stability and solubility: A balancing act between backbone and side-chains	Biophysical Chemistry	2011	221
5	Shape of tropoelastin, the highly extensible protein that controls human tissue elasticity	Proceedings of the National Academy of Sciences of the United States of America	2011	170
6	InterProSurf: a web server for predicting interacting sites on protein surfaces	Bioinformatics	2007	154
7	How do chemokines navigate neutrophils to the target site: Dissecting the structural mechanisms and signaling pathways	Cellular Signalling	2019	152
8	Attenuation of Chikungunya Virus Vaccine Strain 181/Clone 25 Is Determined by Two Amino Acid Substitutions in the E2 Envelope Glycoprotein	Journal of Virology	2012	142
9	Adenosine Analog NITD008 Is a Potent Inhibitor of Zika Virus	Open Forum Infectious Diseases	2016	124
10	Unveiling the in Vivo Protein Corona of Circulating Leukocyte-like Carriers	ACS Nano	2017	124
11	Isoform-specific antagonists of exchange proteins directly activated by cAMP	Proceedings of the National Academy of Sciences of the United States of America	2012	122
12	Microbiome Interaction Networks and Community Structure From Laboratory-Reared and Field-Collected Aedes aegypti, Aedes albopictus, and Culex quinquefasciatus Mosquito Vectors	Frontiers in Microbiology	2018	119
13	Flaviviral Replication Complex: Coordination between RNA Synthesis and 5’-RNA Capping	Viruses	2015	118
14	Data publication with the structural biology data grid supports live analysis	Nature Communications	2016	113
15	Discovery of COVID-19 Inhibitors Targeting the SARS-CoV-2 Nsp13 Helicase	Journal of Physical Chemistry Letters	2020	113
16	Small-molecule Bax agonists for cancer therapy	Nature Communications	2014	110
17	Design and Development of Biomimetic Nanovesicles Using a Microfluidic Approach	Advanced Materials	2018	100
18	Dengue Virus Nonstructural Protein 5 (NS5) Assembles into a Dimer with a Unique Methyltransferase and Polymerase Interface	PLoS Pathogens	2016	96
19	Solution NMR characterization of chemokine CXCL8/IL-8 monomer and dimer binding to glycosaminoglycans: structural plasticity mediates differential binding interactions	Biochemical Journal	2015	91
20	Asymmetrical roles of zinc fingers in dynamic DNA-scanning process by the inducible transcription factor Egr-1	Proceedings of the National Academy of Sciences of the United States of America	2012	90
21	Balancing between affinity and speed in target DNA search by zinc-finger proteins via modulation of dynamic conformational ensemble	Proceedings of the National Academy of Sciences of the United States of America	2015	90
22	Change in permeant size selectivity by phosphorylation of connexin 43 gap-junctional hemichannels by PKC	Proceedings of the National Academy of Sciences of the United States of America	2007	88
23	The O-specific polysaccharide lyase from the phage LKA1 tailspike reduces Pseudomonas virulence	Scientific Reports	2017	88
24	Axl Promotes Zika Virus Entry and Modulates the Antiviral State of Human Sertoli Cells	MBio	2019	88
25	Genetic regulation of vesiculogenesis and immunomodulation in Mycobacterium tuberculosis	Proceedings of the National Academy of Sciences of the United States of America	2013	85
26	Development of a chimeric Zika vaccine using a licensed live-attenuated flavivirus vaccine as backbone	Nature Communications	2018	84
27	Envelope protein ubiquitination drives entry and pathogenesis of Zika virus	Nature	2020	82
28	Isothermal titration calorimetry of membrane proteins — Progress and challenges	Biochimica Et Biophysica Acta - Biomembranes	2014	81
29	Ubiquilin-1 regulates amyloid precursor protein maturation and degradation by stimulating K63-linked polyubiquitination of lysine 688	Proceedings of the National Academy of Sciences of the United States of America	2012	78
30	Enhanced Leptin Sensitivity, Reduced Adiposity, and Improved Glucose Homeostasis in Mice Lacking Exchange Protein Directly Activated by Cyclic AMP Isoform 1	Molecular and Cellular Biology	2013	78
31	Metagenomic Analysis of the Airborne Environment in Urban Spaces	Microbial Ecology	2015	76
32	Modeling the Architecture of Depolymerase-Containing Receptor Binding Proteins in Klebsiella Phages	Frontiers in Microbiology	2019	76
33	Exchange protein directly activated by cAMP plays a critical role in bacterial invasion during fatal rickettsioses	Proceedings of the National Academy of Sciences of the United States of America	2013	73
34	Automated Detection of Conformational Epitopes Using Phage Display Peptide Sequences	Bioinformatics and Biology Insights	2009	72
35	Dynamics of Lysine Side-Chain Amino Groups in a Protein Studied by Heteronuclear ¹H−¹⁵N NMR Spectroscopy	Journal of the American Chemical Society	2011	71
36	Real-time Kinetics of High-mobility Group Box 1 (HMGB1) Oxidation in Extracellular Fluids Studied by in Situ Protein NMR Spectroscopy	Journal of Biological Chemistry	2013	70
37	Structural and Molecular Basis for Coordination in a Viral DNA Packaging Motor	Cell Reports	2016	70
38	Understanding biology by stretching proteins: recent progress	Current Opinion in Structural Biology	2010	69
39	<div>Effects of the protein corona on liposome–liposome and liposome–cell interactions</div>	International Journal of Nanomedicine	2016	67
40	Divergence of multimodular polyketide synthases revealed by a didomain structure	Nature Chemical Biology	2012	66
41	Positive and negative impacts of nonspecific sites during target location by a sequence-specific DNA-binding protein: origin of the optimal search at physiological ionic strength	Nucleic Acids Research	2014	65
42	Oridonin Ring A-Based Diverse Constructions of Enone Functionality: Identification of Novel Dienone Analogues Effective for Highly Aggressive Breast Cancer by Inducing Apoptosis	Journal of Medicinal Chemistry	2013	64
43	Mechanism of Intracellular cAMP Sensor Epac2 Activation	Journal of Biological Chemistry	2011	62
44	Action of a minimal contractile bactericidal nanomachine	Nature	2020	61
45	Computationally predicted IgE epitopes of walnut allergens contribute to cross-reactivity with peanuts	Allergy: European Journal of Allergy and Clinical Immunology	2011	59
46	Accounting for ligand-bound metal ions in docking small molecules on adenylyl cyclase toxins	Proteins: Structure, Function and Bioinformatics	2007	58
47	Poly(A)-ClickSeq: click-chemistry for next-generation 3΄-end sequencing without RNA enrichment or fragmentation	Nucleic Acids Research	2017	58
48	Direct Observation of the Ion-Pair Dynamics at a Protein–DNA Interface by NMR Spectroscopy	Journal of the American Chemical Society	2013	57
49	Chemokine CXCL1 Dimer Is a Potent Agonist for the CXCR2 Receptor	Journal of Biological Chemistry	2013	57
50	A “moving metal mechanism” for substrate cleavage by the DNA repair endonuclease APE-1	Proteins: Structure, Function and Bioinformatics	2007	56

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