| # | Title | Journal | Year | Citations |
|---|
| 1 | Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)1 | Autophagy | 2021 | 1,430 |
| 2 | Spike mutation D614G alters SARS-CoV-2 fitness | Nature | 2021 | 1,380 |
| 3 | A Single Mutation in Chikungunya Virus Affects Vector Specificity and Epidemic Potential | PLoS Pathogens | 2007 | 1,228 |
| 4 | Exogenous and endogenous glycolipid antigens activate NKT cells during microbial infections | Nature | 2005 | 1,015 |
| 5 | Identification of a granulocytotropic Ehrlichia species as the etiologic agent of human disease | Journal of Clinical Microbiology | 1994 | 920 |
| 6 | Zika virus in the Americas: Early epidemiological and genetic findings | Science | 2016 | 877 |
| 7 | Stabilization of Snail by NF-κB Is Required for Inflammation-Induced Cell Migration and Invasion | Cancer Cell | 2009 | 719 |
| 8 | Molecular pathogenesis of hepatocellular carcinoma in hepatitis B virus transgenic mice | Cell | 1989 | 701 |
| 9 | An Infectious cDNA Clone of SARS-CoV-2 | Cell Host and Microbe | 2020 | 617 |
| 10 | Crimean-Congo hemorrhagic fever: History, epidemiology, pathogenesis, clinical syndrome and genetic diversity | Antiviral Research | 2013 | 613 |
| 11 | Genetic Characterization of Zika Virus Strains: Geographic Expansion of the Asian Lineage | PLoS Neglected Tropical Diseases | 2012 | 611 |
| 12 | Loss of furin cleavage site attenuates SARS-CoV-2 pathogenesis | Nature | 2021 | 579 |
| 13 | Rickettsia Species Infecting Amblyomma cooperi Ticks from an Area in the State of São Paulo, Brazil, Where Brazilian Spotted Fever Is Endemic | Journal of Clinical Microbiology | 2004 | 522 |
| 14 | RNA interference screen for human genes associated with West Nile virus infection | Nature | 2008 | 471 |
| 15 | The Banff 2019 Kidney Meeting Report (I): Updates on and clarification of criteria for T cell– and antibody-mediated rejection | American Journal of Transplantation | 2020 | 437 |
| 16 | Origin and Evolution of Japanese Encephalitis Virus in Southeast Asia | Journal of Virology | 2003 | 411 |
| 17 | Taxonomy of the order Mononegavirales: update 2016 | Archives of Virology | 2016 | 407 |
| 18 | A virus-like particle vaccine for epidemic Chikungunya virus protects nonhuman primates against infection | Nature Medicine | 2010 | 403 |
| 19 | Phosphorylation determines two distinct species of tau in the central nervous system | Cytoskeleton | 1987 | 390 |
| 20 | Microbiota-derived short-chain fatty acids promote Th1 cell IL-10 production to maintain intestinal homeostasis | Nature Communications | 2018 | 380 |
| 21 | Antiviral activities of type I interferons to SARS-CoV-2 infection | Antiviral Research | 2020 | 374 |
| 22 | Emergence and potential for spread of Chikungunya virus in Brazil | BMC Medicine | 2015 | 369 |
| 23 | Chikungunya Virus Arthritis in Adult Wild-Type Mice | Journal of Virology | 2010 | 366 |
| 24 | Molecular evolution of dengue viruses: Contributions of phylogenetics to understanding the history and epidemiology of the preeminent arboviral disease | Infection, Genetics and Evolution | 2009 | 354 |
| 25 | Evaluation of Matrix-Assisted Laser Desorption Ionization-Time-of-Flight Mass Spectrometry in Comparison to 16S rRNA Gene Sequencing for Species Identification of Nonfermenting Bacteria | Journal of Clinical Microbiology | 2008 | 350 |
| 26 | Gene Sequence-Based Criteria for Identification of New Rickettsia Isolates and Description of Rickettsia heilongjiangensis sp. nov | Journal of Clinical Microbiology | 2003 | 347 |
| 27 | Maternal Vascular Underperfusion: Nosology and Reproducibility of Placental Reaction Patterns | Pediatric and Developmental Pathology | 2004 | 341 |
| 28 | Impact of Wolbachia on Infection with Chikungunya and Yellow Fever Viruses in the Mosquito Vector Aedes aegypti | PLoS Neglected Tropical Diseases | 2012 | 334 |
| 29 | Yellow Fever: A Disease that Has Yet to be Conquered | Annual Review of Entomology | 2007 | 325 |
| 30 | Microbiota metabolite short-chain fatty acid acetate promotes intestinal IgA response to microbiota which is mediated by GPR43 | Mucosal Immunology | 2017 | 323 |
| 31 | Emergence of the Ehrlichioses as Human Health Problems | Emerging Infectious Diseases | 1996 | 323 |
| 32 | GPR43 mediates microbiota metabolite SCFA regulation of antimicrobial peptide expression in intestinal epithelial cells via activation of mTOR and STAT3 | Mucosal Immunology | 2018 | 322 |
| 33 | Single Nucleotide Polymorphisms in Genes Associated with Isoniazid Resistance in Mycobacterium tuberculosis | Antimicrobial Agents and Chemotherapy | 2003 | 316 |
| 34 | A review of the global epidemiology of scrub typhus | PLoS Neglected Tropical Diseases | 2017 | 283 |
| 35 | Zika Virus Emergence in Mosquitoes in Southeastern Senegal, 2011 | PLoS ONE | 2014 | 275 |
| 36 | Envelope Protein Glycosylation Status Influences Mouse Neuroinvasion Phenotype of Genetic Lineage 1 West Nile Virus Strains | Journal of Virology | 2005 | 274 |
| 37 | Fever from the forest: prospects for the continued emergence of sylvatic dengue virus and its impact on public health | Nature Reviews Microbiology | 2011 | 274 |
| 38 | Arrival of Chikungunya Virus in the New World: Prospects for Spread and Impact on Public Health | PLoS Neglected Tropical Diseases | 2014 | 271 |
| 39 | A high-throughput neutralizing antibody assay for COVID-19 diagnosis and vaccine evaluation | Nature Communications | 2020 | 266 |
| 40 | Out of Africa: A Molecular Perspective on the Introduction of Yellow Fever Virus into the Americas | PLoS Pathogens | 2007 | 264 |
| 41 | Chikungunya virus adapts to tiger mosquito via evolutionary convergence: a sign of things to come? | Virology Journal | 2008 | 262 |
| 42 | A Critical Role for Induced IgM in the Protection against West Nile Virus Infection | Journal of Experimental Medicine | 2003 | 261 |
| 43 | <I>Rickettsia bellii</I> and <I>Rickettsia amblyommii</I> in <I>Amblyomma</I> Ticks from the State of Rondônia, Western Amazon, Brazil | Journal of Medical Entomology | 2004 | 261 |
| 44 | Oleander toxicity: an examination of human and animal toxic exposures | Toxicology | 1996 | 252 |
| 45 | Low neutralization of SARS-CoV-2 Omicron BA.2.75.2, BQ.1.1 and XBB.1 by parental mRNA vaccine or a BA.5 bivalent booster | Nature Medicine | 2023 | 249 |
| 46 | Passive Immunization with Tau Oligomer Monoclonal Antibody Reverses Tauopathy Phenotypes without Affecting Hyperphosphorylated Neurofibrillary Tangles | Journal of Neuroscience | 2014 | 241 |
| 47 | Encephalitic alphaviruses | Veterinary Microbiology | 2010 | 232 |
| 48 | Type- and Subcomplex-Specific Neutralizing Antibodies against Domain III of Dengue Virus Type 2 Envelope Protein Recognize Adjacent Epitopes | Journal of Virology | 2007 | 231 |
| 49 | Identification of Neutralizing Epitopes within Structural Domain III of the West Nile Virus Envelope Protein | Journal of Virology | 2002 | 230 |
| 50 | Person-to-Person Transmission of Severe Fever with Thrombocytopenia Syndrome Virus | Vector-Borne and Zoonotic Diseases | 2012 | 229 |
