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#	Title	Journal	Year	Citations
1	Human mesenchymal stem cells (hMSCs) target osteosarcoma and promote its growth and pulmonary metastasis	Cancer Letters	2009	182
2	Inferring the conservative causal core of gene regulatory networks	BMC Systems Biology	2010	167
3	STAT3 regulated ARF expression suppresses prostate cancer metastasis	Nature Communications	2015	136
4	Bioreactor Expansion of Human Adult Bone Marrow‐Derived Mesenchymal Stem Cells	Stem Cells	2006	132
5	A Consistent Phylogenetic Backbone for the Fungi	Molecular Biology and Evolution	2012	129
6	Bagging Statistical Network Inference from Large-Scale Gene Expression Data	PLoS ONE	2012	122
7	Networks for systems biology: conceptual connection of data and function	IET Systems Biology	2011	105
8	Pathway Analysis of Expression Data: Deciphering Functional Building Blocks of Complex Diseases	PLoS Computational Biology	2011	101
9	Revealing differences in gene network inference algorithms on the network level by ensemble methods	Bioinformatics	2010	90
10	Enzymatic Mineralization of Hydrogels for Bone Tissue Engineering by Incorporation of Alkaline Phosphatase	Macromolecular Bioscience	2012	75
11	The gene regulatory network for breast cancer: integrated regulatory landscape of cancer hallmarks	Frontiers in Genetics	2014	74
12	Chondrogenic Differentiation Alters the Immunosuppressive Property of Bone Marrow-Derived Mesenchymal Stem Cells, and the Effect Is Partially due to the Upregulated Expression of B7 Molecules	Stem Cells	2007	71
13	Theranostic AGuIX nanoparticles as radiosensitizer: A phase I, dose-escalation study in patients with multiple brain metastases (NANO-RAD trial)	Radiotherapy and Oncology	2021	67
14	Network biology: a direct approach to study biological function	Wiley Interdisciplinary Reviews: Systems Biology and Medicine	2011	53
15	Cadherin-11 in poor prognosis malignancies and rheumatoid arthritis: common target, common therapies	Oncotarget	2014	52
16	Interrelations of Graph Distance Measures Based on Topological Indices	PLoS ONE	2014	49
17	SOX9 Directly Binds CREB as a Novel Synergism With the PKA Pathway in BMP-2–Induced Osteochondrogenic Differentiation	Journal of Bone and Mineral Research	2009	47
18	Entropy bounds for dendrimers	Applied Mathematics and Computation	2014	46
19	A role of autophagy in PTP4A3-driven cancer progression	Autophagy	2014	40
20	Inference and validation of predictive gene networks from biomedical literature and gene expression data	Genomics	2014	40
21	Néstor-Guillermo Progeria Syndrome: a biochemical insight into Barrier-to-Autointegration Factor 1, alanine 12 threonine mutation	BMC Molecular Biology	2014	38
22	Entropy Bounds for Hierarchical Molecular Networks	PLoS ONE	2008	34
23	Src and ADAM-17–Mediated Shedding of Transforming Growth Factor-α Is a Mechanism of Acute Resistance to TRAIL	Cancer Research	2008	33
24	Functional and genetic analysis of the colon cancer network	BMC Bioinformatics	2014	33
25	Folates as adjuvants to anticancer agents: Chemical rationale and mechanism of action	Critical Reviews in Oncology/Hematology	2016	32
26	Ran GTPase promotes cancer progression via Met receptor-mediated downstream signaling	Oncotarget	2016	31
27	Exploring Statistical and Population Aspects of Network Complexity	PLoS ONE	2012	29
28	A computational approach to construct a multivariate complete graph invariant	Information Sciences	2014	29
29	Local network-based measures to assess the inferability of different regulatory networks	IET Systems Biology	2010	27
30	Influence of the Time Scale on the Construction of Financial Networks	PLoS ONE	2010	27
31	Influence of Statistical Estimators of Mutual Information and Data Heterogeneity on the Inference of Gene Regulatory Networks	PLoS ONE	2011	26
32	Information processing in the transcriptional regulatory network of yeast: Functional robustness	BMC Systems Biology	2009	25
33	Comparative evaluation of gene set analysis approaches for RNA-Seq data	BMC Bioinformatics	2014	25
34	Ensuring the statistical soundness of competitive gene set approaches: gene filtering and genome-scale coverage are essential	Nucleic Acids Research	2013	24
35	Connections between Classical and Parametric Network Entropies	PLoS ONE	2011	23
36	Probabilistic inequalities for evaluating structural network measures	Information Sciences	2014	23
37	Hoxa cluster genes determine the proliferative activity of adult mouse hematopoietic stem and progenitor cells	Blood	2016	23
38	Organizational structure and the periphery of the gene regulatory network in B-cell lymphoma	BMC Systems Biology	2012	22
39	An efficient heuristic approach to detecting graph isomorphism based on combinations of highly discriminating invariants	Advances in Computational Mathematics	2013	22
40	B-cell lymphoma gene regulatory networks: biological consistency among inference methods	Frontiers in Genetics	2013	21
41	Quantitative Network Measures as Biomarkers for Classifying Prostate Cancer Disease States: A Systems Approach to Diagnostic Biomarkers	PLoS ONE	2013	18
42	Structural Measures for Network Biology Using QuACN	BMC Bioinformatics	2011	17
43	Assessment Method for a Power Analysis to Identify Differentially Expressed Pathways	PLoS ONE	2012	16
44	Statistic Complexity: Combining Kolmogorov Complexity with an Ensemble Approach	PLoS ONE	2010	15
45	Entropy, Orbits, and Spectra of Graphs		0	14
46	Asymptomatic shedding of HSV-1 in patients undergoing oral surgical procedures and attending for noninvasive treatment	Oral Diseases	2007	13
47	Association between the expression levels of TAZ, AXL and CTGF and clinicopathological parameters in patients with colon cancer	Oncology Letters	2016	12
48	Large-Scale Evaluation of Molecular Descriptors by Means of Clustering	PLoS ONE	2013	12
49	Histone acetylation and chromatin pattern in cancer. A review		2007	12
50	samExploreR: exploring reproducibility and robustness of RNA-seq results based on SAM files	Bioinformatics	2016	11

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