| # | Title | Journal | Year | Citations |
|---|
| 1 | Improved method for predicting linear B-cell epitopes | Immunome Research | 2006 | 1,034 |
| 2 | Expression analysis of G Protein-Coupled Receptors in mouse macrophages | Immunome Research | 2008 | 400 |
| 3 | Quantitative peptide binding motifs for 19 human and mouse MHC class I molecules derived using positional scanning combinatorial peptide libraries | Immunome Research | 2008 | 293 |
| 4 | Identification of conformational B-cell Epitopes in an antigen from its primary sequence | Immunome Research | 2010 | 264 |
| 5 | AntiJen: a quantitative immunology database integrating functional, thermodynamic, kinetic, biophysical, and cellular data | Immunome Research | 2005 | 157 |
| 6 | Recent advances in B-cell epitope prediction methods | Immunome Research | 2010 | 149 |
| 7 | NetMHCIIpan-2.0 - Improved pan-specific HLA-DR predictions using a novel concurrent alignment and weight optimization training procedure | Immunome Research | 2010 | 132 |
| 8 | Computer aided selection of candidate vaccine antigens | Immunome Research | 2010 | 93 |
| 9 | Modeling the bound conformation of Pemphigus vulgaris-associated peptides to MHC Class II DR and DQ alleles | Immunome Research | 2006 | 88 |
| 10 | Peptide length significantly influences in vitro affinity for MHC class II molecules | Immunome Research | 2008 | 78 |
| 11 | Analysis and prediction of protective continuous B-cell epitopes on pathogen proteins | Immunome Research | 2008 | 66 |
| 12 | PRED(TAP): a system for prediction of peptide binding to the human transporter associated with antigen processing | Immunome Research | 2006 | 62 |
| 13 | Functional recombinant MHC class II molecules and high-throughput peptide-binding assays | Immunome Research | 2009 | 62 |
| 14 | Strength in numbers: achieving greater accuracy in MHC-I binding prediction by combining the results from multiple prediction tools | Immunome Research | 2007 | 56 |
| 15 | An analysis of the epitope knowledge related to Mycobacteria | Immunome Research | 2007 | 54 |
| 16 | Evolution of a cluster of innate immune genes (β-defensins) along the ancestral lines of chicken and zebra finch | Immunome Research | 2010 | 54 |
| 17 | State of the art and challenges in sequence based T-cell epitope prediction | Immunome Research | 2010 | 52 |
| 18 | IMGT, the international ImMunoGeneTics information system: a standardized approach for immunogenetics and immunoinformatics | Immunome Research | 2005 | 49 |
| 19 | Prediction of MHC class II binding peptides based on an iterative learning model | Immunome Research | 2005 | 49 |
| 20 | Ribosomal protein mRNAs are translationally-regulated during human dendritic cells activation by LPS | Immunome Research | 2009 | 49 |
| 21 | Human immunome, bioinformatic analyses using HLA supermotifs and the parasite genome, binding assays, studies of human T cell responses, and immunization of HLA-A*1101 transgenic mice including novel adjuvants provide a foundation for HLA-A03 restricted CD8+T cell epitope based, adjuvanted vaccine protective against Toxoplasma gondii | Immunome Research | 2010 | 48 |
| 22 | Bioinformatics analysis of Brucella vaccines and vaccine targets using VIOLIN | Immunome Research | 2010 | 46 |
| 23 | EpitopeViewer: a Java application for the visualization and analysis of immune epitopes in the Immune Epitope Database and Analysis Resource (IEDB) | Immunome Research | 2007 | 44 |
| 24 | In silico identification of opossum cytokine genes suggests the complexity of the marsupial immune system rivals that of eutherian mammals | Immunome Research | 2006 | 41 |
| 25 | Large-scale analysis of human heavy chain V(D)J recombination patterns | Immunome Research | 2008 | 41 |
| 26 | Of mice and humans: how good are HLA transgenic mice as a model of human immune responses? | Immunome Research | 2009 | 39 |
| 27 | An integrated approach to epitope analysis II: A system for proteomic-scale prediction of immunological characteristics | Immunome Research | 2010 | 39 |
| 28 | An ontology for immune epitopes: application to the design of a broad scope database of immune reactivities | Immunome Research | 2005 | 37 |
| 29 | pDOCK: a new technique for rapid and accurate docking of peptide ligands to Major Histocompatibility Complexes | Immunome Research | 2010 | 37 |
| 30 | Interleukin-6 Cytokine: A Multifunctional Glycoprotein for Cancer | Immunome Research | 2013 | 37 |
| 31 | Clustering-based identification of clonally-related immunoglobulin gene sequence sets | Immunome Research | 2010 | 34 |
| 32 | Interleukin-6 cytokine: a multifunctional glycoprotein for cancer | Immunome Research | 2013 | 34 |
| 33 | IMGT/HIGHV-QUEST: THE IMGT® WEB PORTAL FOR IMMUNOGLOBULIN (IG) OR ANTIBODY AND T CELL RECEPTOR (TR) ANALYSIS FROM NGS HIGH THROUGHPUT AND DEEP SEQUENCING | Immunome Research | 2012 | 33 |
| 34 | Modelling vaccination schedules for a cancer immunoprevention vaccine | Immunome Research | 2005 | 32 |
| 35 | Concept and application of a computational vaccinology workflow | Immunome Research | 2010 | 32 |
| 36 | A novel strategy for the identification of antigens that are recognised by bovine MHC class I restricted cytotoxic T cells in a protozoan infection using reverse vaccinology | Immunome Research | 2007 | 31 |
| 37 | Bridging the gap between single-template and fragment based protein structure modeling using Spanner | Immunome Research | 2011 | 29 |
| 38 | IDR knowledge base for primary immunodeficiencies | Immunome Research | 2007 | 27 |
| 39 | An integrated approach to epitope analysis I: Dimensional reduction, visualization and prediction of MHC binding using amino acid principal components and regression approaches | Immunome Research | 2010 | 26 |
| 40 | T-cell epitope prediction and immune complex simulation using molecular dynamics: state of the art and persisting challenges | Immunome Research | 2010 | 25 |
| 41 | Critical role of glycosylation in determining the length and structure of T cell epitopes | Immunome Research | 2009 | 24 |
| 42 | A novel paradigm for cell and molecule interaction ontology: from the CMM model to IMGT-ONTOLOGY | Immunome Research | 2010 | 23 |
| 43 | DC-ATLAS: a systems biology resource to dissect receptor specific signal transduction in dendritic cells | Immunome Research | 2010 | 23 |
| 44 | ImmTree: Database of evolutionary relationships of genes and proteins in the human immune system | Immunome Research | 2007 | 20 |
| 45 | Models of RNA virus evolution and their roles in vaccine design | Immunome Research | 2010 | 19 |
| 46 | Polyfunctional CD4+ T cell responses to a set of pathogenic arenaviruses provide broad population coverage | Immunome Research | 2010 | 16 |
| 47 | Zinc Oxide Nanoparticles: Opportunities and Challenges in Veterinary Sciences | Immunome Research | 2015 | 16 |
| 48 | Efficiency of the immunome protein interaction network increases during evolution | Immunome Research | 2008 | 15 |
| 49 | TAP Hunter: a SVM-based system for predicting TAP ligands using local description of amino acid sequence | Immunome Research | 2010 | 15 |
| 50 | Dietary Patterns, Foods, Nutrients and Chronic Inflammatory Disorders | Immunome Research | 2016 | 15 |
