| # | Title | Journal | Year | Citations |
|---|
| 1 | Commensal Clostridia: leading players in the maintenance of gut homeostasis | Gut Pathogens | 2013 | 631 |
| 2 | A randomized, double-blind, placebo-controlled pilot study of a probiotic in emotional symptoms of chronic fatigue syndrome | Gut Pathogens | 2009 | 448 |
| 3 | Inherent bacterial DNA contamination of extraction and sequencing reagents may affect interpretation of microbiota in low bacterial biomass samples | Gut Pathogens | 2016 | 446 |
| 4 | Virulence factors, prevalence and potential transmission of extraintestinal pathogenic Escherichia coli isolated from different sources: recent reports | Gut Pathogens | 2019 | 402 |
| 5 | The role of probiotics, prebiotics and synbiotics in animal nutrition | Gut Pathogens | 2018 | 360 |
| 6 | Differences in gut microbiota composition between obese and lean children: a cross-sectional study | Gut Pathogens | 2013 | 351 |
| 7 | Deciphering chicken gut microbial dynamics based on high-throughput 16S rRNA metagenomics analyses | Gut Pathogens | 2015 | 230 |
| 8 | Microbial imbalance in inflammatory bowel disease patients at different taxonomic levels | Gut Pathogens | 2020 | 230 |
| 9 | Alterations of the gut microbiome in Chinese patients with systemic lupus erythematosus | Gut Pathogens | 2016 | 195 |
| 10 | Strain-specific probiotic properties of lactic acid bacteria and their interference with human intestinal pathogens invasion | Gut Pathogens | 2017 | 185 |
| 11 | Acne vulgaris, probiotics and the gut-brain-skin axis - back to the future? | Gut Pathogens | 2011 | 175 |
| 12 | Luminal and mucosal-associated intestinal microbiota in patients with diarrhea-predominant irritable bowel syndrome | Gut Pathogens | 2010 | 167 |
| 13 | Animal models to study acute and chronic intestinal inflammation in mammals | Gut Pathogens | 2015 | 160 |
| 14 | Helicobacter pylori: a poor man's gut pathogen? | Gut Pathogens | 2010 | 156 |
| 15 | Emerging trends in the etiology of enteric pathogens as evidenced from an active surveillance of hospitalized diarrhoeal patients in Kolkata, India | Gut Pathogens | 2010 | 154 |
| 16 | Systematic review of time trends in the prevalence of Helicobacter pylori infection in China and the USA | Gut Pathogens | 2016 | 154 |
| 17 | Involvement of gut microbiome in human health and disease: brief overview, knowledge gaps and research opportunities | Gut Pathogens | 2018 | 153 |
| 18 | Alteration in gut microbiota associated with hepatitis B and non-hepatitis virus related hepatocellular carcinoma | Gut Pathogens | 2019 | 143 |
| 19 | Probiotics and gastrointestinal disease: successes, problems and future prospects | Gut Pathogens | 2009 | 134 |
| 20 | Metagenome of the gut of a malnourished child | Gut Pathogens | 2011 | 133 |
| 21 | Rapid paracellular transmigration of Campylobacter jejuni across polarized epithelial cells without affecting TER: role of proteolytic-active HtrA cleaving E-cadherin but not fibronectin | Gut Pathogens | 2012 | 130 |
| 22 | Gut Pharmacomicrobiomics: the tip of an iceberg of complex interactions between drugs and gut-associated microbes | Gut Pathogens | 2012 | 127 |
| 23 | Intestinal microflora and body mass index during the first three years of life: an observational study | Gut Pathogens | 2011 | 126 |
| 24 | Diversified pattern of the human colorectal cancer microbiome | Gut Pathogens | 2013 | 121 |
| 25 | Update on the pathogenic potential and treatment options for Blastocystis sp | Gut Pathogens | 2014 | 121 |
| 26 | A human stool-derived Bilophila wadsworthia strain caused systemic inflammation in specific-pathogen-free mice | Gut Pathogens | 2017 | 120 |
| 27 | Metagenomic profile of gut microbiota in children during cholera and recovery | Gut Pathogens | 2013 | 118 |
| 28 | Bacteriophages in the gastrointestinal tract and their implications | Gut Pathogens | 2017 | 114 |
| 29 | Campylobacter jejuni induces transcellular translocation of commensal bacteria via lipid rafts | Gut Pathogens | 2009 | 113 |
| 30 | Gut microbiome alterations in patients with stage 4 hepatitis C | Gut Pathogens | 2016 | 113 |
| 31 | Probiotic engineering: towards development of robust probiotic strains with enhanced functional properties and for targeted control of enteric pathogens | Gut Pathogens | 2017 | 113 |
| 32 | Anti-inflammatory effects of Lactococcus lactis NCDO 2118 during the remission period of chemically induced colitis | Gut Pathogens | 2014 | 112 |
| 33 | Adhesive threads of extraintestinal pathogenic Escherichia coli | Gut Pathogens | 2009 | 104 |
| 34 | Co-occurrence of driver and passenger bacteria in human colorectal cancer | Gut Pathogens | 2014 | 100 |
| 35 | Intestinal microbiota, probiotics and mental health: from Metchnikoff to modern advances: Part I – autointoxication revisited | Gut Pathogens | 2013 | 95 |
| 36 | The interplay between Campylobacter and Helicobacter species and other gastrointestinal microbiota of commercial broiler chickens | Gut Pathogens | 2014 | 95 |
| 37 | Epidemiological, molecular characterization and antibiotic resistance of Salmonella enterica serovars isolated from chicken farms in Egypt | Gut Pathogens | 2017 | 90 |
| 38 | Gut microbiota influence in type 2 diabetes mellitus (T2DM) | Gut Pathogens | 2021 | 89 |
| 39 | Inhibitory activity of postbiotic produced by strains of Lactobacillus plantarum using reconstituted media supplemented with inulin | Gut Pathogens | 2014 | 88 |
| 40 | Differences in the gut microbiota of dogs (Canis lupus familiaris) fed a natural diet or a commercial feed revealed by the Illumina MiSeq platform | Gut Pathogens | 2017 | 86 |
| 41 | Prevalence of antibiotic resistance in lactic acid bacteria isolated from the faeces of broiler chicken in Malaysia | Gut Pathogens | 2014 | 85 |
| 42 | Effects of indole on drug resistance and virulence of Salmonella enterica serovar Typhimurium revealed by genome-wide analyses | Gut Pathogens | 2012 | 84 |
| 43 | Characterization of bacterial community shift in human Ulcerative Colitis patients revealed by Illumina based 16S rRNA gene amplicon sequencing | Gut Pathogens | 2014 | 84 |
| 44 | Genotypes and virulence in serotype K2 Klebsiella pneumoniae from liver abscess and non-infectious carriers in Hong Kong, Singapore and Taiwan | Gut Pathogens | 2014 | 84 |
| 45 | Gut microbiota changes in children with autism spectrum disorder: a systematic review | Gut Pathogens | 2020 | 83 |
| 46 | Lactobacillus delbrueckii ssp. bulgaricus B-30892 can inhibit cytotoxic effects and adhesion of pathogenic Clostridium difficile to Caco-2 cells | Gut Pathogens | 2009 | 82 |
| 47 | Persistent gut barrier damage and commensal bacterial influx following eradication of Giardia infection in mice | Gut Pathogens | 2013 | 81 |
| 48 | Intestinal microbiota, probiotics and mental health: from Metchnikoff to modern advances: Part II – contemporary contextual research | Gut Pathogens | 2013 | 80 |
| 49 | Mycobacterium avium subspecies paratuberculosis, Crohn's disease and the Doomsday scenario | Gut Pathogens | 2009 | 79 |
| 50 | Mycobacterium avium subsp. paratuberculosis and associated risk factors for inflammatory bowel disease in Iranian patients | Gut Pathogens | 2017 | 78 |
