5.2(top 5%)
impact factor
1.7K(top 10%)
papers
38.4K(top 10%)
citations
80(top 10%)
h-index
5.3(top 5%)
impact factor
2.1K
all documents
46.9K
doc citations
135(top 10%)
g-index

Top Articles

#TitleJournalYearCitations
1Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community SurveysMSystems20161,364
2Deblur Rapidly Resolves Single-Nucleotide Community Sequence PatternsMSystems20171,339
3SARS-CoV-2 Titers in Wastewater Are Higher than Expected from Clinically Confirmed CasesMSystems2020649
4American Gut: an Open Platform for Citizen Science Microbiome ResearchMSystems2018604
5Microbiome Helper: a Custom and Streamlined Workflow for Microbiome ResearchMSystems2017558
6Getting the Hologenome Concept Right: an Eco-Evolutionary Framework for Hosts and Their MicrobiomesMSystems2016388
7Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical InformationMSystems2018376
8Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field StudiesMSystems2016367
9New Insights into Human Nostril Microbiome from the Expanded Human Oral Microbiome Database (eHOMD): a Resource for the Microbiome of the Human Aerodigestive TractMSystems2018346
10Diversity and Activity of Communities Inhabiting Plastic Debris in the North Pacific GyreMSystems2016330
11Studying Vertical Microbiome Transmission from Mothers to Infants by Strain-Level Metagenomic ProfilingMSystems2017329
12Colonic Butyrate-Producing Communities in Humans: an Overview Using Omics DataMSystems2017328
132019 Novel Coronavirus (COVID-19) Pandemic: Built Environment Considerations To Reduce TransmissionMSystems2020302
14A Novel Sparse Compositional Technique Reveals Microbial PerturbationsMSystems2019295
15Evaluating the Information Content of Shallow Shotgun MetagenomicsMSystems2018293
16Balance Trees Reveal Microbial Niche DifferentiationMSystems2017284
17Phylogenetically Novel Uncultured Microbial Cells Dominate Earth MicrobiomesMSystems2018273
18Meta-analysis To Define a Core Microbiota in the Swine GutMSystems2017240
19Salinity Is a Key Determinant for Soil Microbial Communities in a Desert EcosystemMSystems2019238
20Age- and Sex-Dependent Patterns of Gut Microbial Diversity in Human AdultsMSystems2019214
21q2-longitudinal: Longitudinal and Paired-Sample Analyses of Microbiome DataMSystems2018210
22Gut Microbiota Offers Universal Biomarkers across Ethnicity in Inflammatory Bowel Disease Diagnosis and Infliximab Response PredictionMSystems2018204
23Microbial Succession and Flavor Production in the Fermented Dairy Beverage KefirMSystems2016202
24Total Lipopolysaccharide from the Human Gut Microbiome Silences Toll-Like Receptor SignalingMSystems2017202
25SARS-CoV-2 and ORF3a: Nonsynonymous Mutations, Functional Domains, and Viral PathogenesisMSystems2020195
26Soil Viruses Are Underexplored Players in Ecosystem Carbon ProcessingMSystems2018189
27Balances: a New Perspective for Microbiome AnalysisMSystems2018188
28Depletion of Blautia Species in the Microbiota of Obese Children Relates to Intestinal Inflammation and Metabolic Phenotype WorseningMSystems2020185
29phyloFlash: Rapid Small-Subunit rRNA Profiling and Targeted Assembly from MetagenomesMSystems2020180
30Insights into Butyrate Production in a Controlled Fermentation System via Gene PredictionsMSystems2017169
31Metabolic Model-Based Integration of Microbiome Taxonomic and Metabolomic Profiles Elucidates Mechanistic Links between Ecological and Metabolic VariationMSystems2016167
32MPLEx: a Robust and Universal Protocol for Single-Sample Integrative Proteomic, Metabolomic, and Lipidomic AnalysesMSystems2016166
33Controlling for Contaminants in Low-Biomass 16S rRNA Gene Sequencing ExperimentsMSystems2019166
34Gut Microbiota and Metabolome Alterations Associated with Parkinson’s DiseaseMSystems2020161
35Probiotic Bifidobacterium lactis V9 Regulates the Secretion of Sex Hormones in Polycystic Ovary Syndrome Patients through the Gut-Brain AxisMSystems2019157
36Open-Source Sequence Clustering Methods Improve the State Of the ArtMSystems2016155
37Impact of Sample Type and DNA Isolation Procedure on Genomic Inference of Microbiome CompositionMSystems2016153
38Nonpareil 3: Fast Estimation of Metagenomic Coverage and Sequence DiversityMSystems2018152
39Lifestyle and Horizontal Gene Transfer-Mediated Evolution of Mucispirillum schaedleri, a Core Member of the Murine Gut MicrobiotaMSystems2017148
40A Prospective Metagenomic and Metabolomic Analysis of the Impact of Exercise and/or Whey Protein Supplementation on the Gut Microbiome of Sedentary AdultsMSystems2018148
41Significant Impacts of Increasing Aridity on the Arid Soil MicrobiomeMSystems2017141
42Consistent Metagenome-Derived Metrics Verify and Delineate Bacterial Species BoundariesMSystems2020135
43Development of the Human Mycobiome over the First Month of Life and across Body SitesMSystems2018132
44Quantifying and Understanding Well-to-Well Contamination in Microbiome ResearchMSystems2019132
45Clostridium difficile Colonizes Alternative Nutrient Niches during Infection across Distinct Murine Gut MicrobiomesMSystems2017130
46Core Microbiota in Agricultural Soils and Their Potential Associations with Nutrient CyclingMSystems2019130
47MICOM: Metagenome-Scale Modeling To Infer Metabolic Interactions in the Gut MicrobiotaMSystems2020126
48KatharoSeq Enables High-Throughput Microbiome Analysis from Low-Biomass SamplesMSystems2018123
49Genome-Enabled Insights into the Ecophysiology of the Comammox Bacterium “ Candidatus Nitrospira nitrosa”MSystems2017119
50On the Road to Strain-Resolved Comparative MetagenomicsMSystems2018119