| # | Title | Journal | Year | Citations |
|---|
| 1 | Insights from 20 years of bacterial genome sequencing | Functional and Integrative Genomics | 2015 | 580 |
| 2 | Water and salinity stress in grapevines: early and late changes in transcript and metabolite profiles | Functional and Integrative Genomics | 2007 | 474 |
| 3 | Microsatellite-based deletion bin system for the establishment of genetic-physical map relationships in wheat ( Triticum aestivum L.) | Functional and Integrative Genomics | 2004 | 465 |
| 4 | Monitoring the expression pattern of around 7,000 Arabidopsis genes under ABA treatments using a full-length cDNA microarray | Functional and Integrative Genomics | 2002 | 394 |
| 5 | The genomics of yeast responses to environmental stress and starvation | Functional and Integrative Genomics | 2002 | 363 |
| 6 | Structure and expression analysis of early auxin-responsive Aux/IAA gene family in rice (Oryza sativa) | Functional and Integrative Genomics | 2006 | 248 |
| 7 | CRISPR/Cas9 genome editing in wheat | Functional and Integrative Genomics | 2018 | 241 |
| 8 | Auxin-related gene families in abiotic stress response in Sorghum bicolor | Functional and Integrative Genomics | 2010 | 240 |
| 9 | Suppression by ABA of salicylic acid and lignin accumulation and the expression of multiple genes, in Arabidopsis infected with Pseudomonas syringae pv. tomato | Functional and Integrative Genomics | 2007 | 237 |
| 10 | Regulation of barley miRNAs upon dehydration stress correlated with target gene expression | Functional and Integrative Genomics | 2010 | 233 |
| 11 | Plant miRNAs: biogenesis, organization and origins | Functional and Integrative Genomics | 2015 | 233 |
| 12 | Plant and animal microRNAs: similarities and differences | Functional and Integrative Genomics | 2005 | 223 |
| 13 | The R2R3-MYB, bHLH, WD40, and related transcription factors in flavonoid biosynthesis | Functional and Integrative Genomics | 2013 | 216 |
| 14 | Molecular markers from the transcribed/expressed region of the genome in higher plants | Functional and Integrative Genomics | 2004 | 210 |
| 15 | CRISPR/Cas9-mediated efficient editing in phytoene desaturase (PDS) demonstrates precise manipulation in banana cv. Rasthali genome | Functional and Integrative Genomics | 2018 | 203 |
| 16 | miRNA-based drought regulation in wheat | Functional and Integrative Genomics | 2016 | 202 |
| 17 | The auxin-responsive GH3 gene family in rice (Oryza sativa) | Functional and Integrative Genomics | 2006 | 201 |
| 18 | Titanium dioxide nanoparticles affect the growth and microRNA expression of tobacco (Nicotiana tabacum) | Functional and Integrative Genomics | 2014 | 190 |
| 19 | TAIR: a resource for integrated Arabidopsis data | Functional and Integrative Genomics | 2002 | 184 |
| 20 | Complex microcolinearity among wheat, rice, and barley revealed by fine mapping of the genomic region harboring a major QTL for resistance to Fusarium head blight in wheat | Functional and Integrative Genomics | 2006 | 183 |
| 21 | Abscisic acid stimulated ripening and gene expression in berry skins of the Cabernet Sauvignon grape | Functional and Integrative Genomics | 2010 | 182 |
| 22 | Long noncoding RNA (lincRNA), a new paradigm in gene expression control | Functional and Integrative Genomics | 2017 | 182 |
| 23 | Understanding the rise of the superbug: investigation of the evolution and genomic variation of Staphylococcus aureus | Functional and Integrative Genomics | 2006 | 181 |
| 24 | Drought stress responses in crops | Functional and Integrative Genomics | 2014 | 181 |
| 25 | Characterization of EST-derived microsatellites in the wheat genome and development of eSSR markers | Functional and Integrative Genomics | 2005 | 177 |
| 26 | The wheat (T. aestivum) sucrose synthase 2 gene (TaSus2) active in endosperm development is associated with yield traits | Functional and Integrative Genomics | 2011 | 174 |
| 27 | Dehydrin gene expression provides an indicator of low temperature and drought stress: transcriptome-based analysis of Barley (Hordeum vulgare L.) | Functional and Integrative Genomics | 2008 | 173 |
| 28 | Salt stress response in rice: genetics, molecular biology, and comparative genomics | Functional and Integrative Genomics | 2006 | 169 |
| 29 | Phenylalanine ammonia-lyase (PAL) and cinnamate 4-hydroxylase (C4H) and catechins (flavan-3-ols) accumulation in tea | Functional and Integrative Genomics | 2009 | 161 |
| 30 | GA-20 oxidase as a candidate for the semidwarf gene sdw1/denso in barley | Functional and Integrative Genomics | 2009 | 158 |
| 31 | Genes controlling seed dormancy and pre-harvest sprouting in a rice-wheat-barley comparison | Functional and Integrative Genomics | 2004 | 157 |
| 32 | Ten years of bacterial genome sequencing: comparative-genomics-based discoveries | Functional and Integrative Genomics | 2006 | 156 |
| 33 | Transposable elements, genes and recombination in a 215-kb contig from wheat chromosome 5Am | Functional and Integrative Genomics | 2002 | 153 |
| 34 | Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv | Functional and Integrative Genomics | 2009 | 153 |
| 35 | Genome-wide analysis of rice and Arabidopsis identifies two glyoxalase genes that are highly expressed in abiotic stresses | Functional and Integrative Genomics | 2011 | 146 |
| 36 | Major intrinsic proteins (MIPs) in plants: a complex gene family with major impacts on plant phenotype | Functional and Integrative Genomics | 2007 | 144 |
| 37 | Identification of quantitative trait loci and associated candidate genes for low-temperature tolerance in cold-hardy winter wheat | Functional and Integrative Genomics | 2006 | 143 |
| 38 | Comparative DNA sequence analysis of mapped wheat ESTs reveals the complexity of genome relationships between rice and wheat | Functional and Integrative Genomics | 2004 | 141 |
| 39 | Arabidopsis thaliana J-class heat shock proteins: cellular stress sensors | Functional and Integrative Genomics | 2009 | 141 |
| 40 | Transcriptome map for seedling stage specific salinity stress response indicates a specific set of genes as candidate for saline tolerance in Oryza sativa L. | Functional and Integrative Genomics | 2009 | 140 |
| 41 | Molecular characterization of a set of wheat deletion stocks for use in chromosome bin mapping of ESTs | Functional and Integrative Genomics | 2003 | 138 |
| 42 | Expression analysis of barley (Hordeum vulgare L.) during salinity stress | Functional and Integrative Genomics | 2006 | 138 |
| 43 | An atlas of gene expression from seed to seed through barley development | Functional and Integrative Genomics | 2006 | 138 |
| 44 | Monitoring expression profiles of Arabidopsis genes during cold acclimation and deacclimation using DNA microarrays | Functional and Integrative Genomics | 2006 | 137 |
| 45 | Dicer-like (DCL) proteins in plants | Functional and Integrative Genomics | 2009 | 136 |
| 46 | Gene expression profiling of potato responses to cold, heat, and salt stress | Functional and Integrative Genomics | 2005 | 132 |
| 47 | HvNax3—a locus controlling shoot sodium exclusion derived from wild barley (Hordeum vulgare ssp. spontaneum) | Functional and Integrative Genomics | 2010 | 132 |
| 48 | Transcriptome pathways unique to dehydration tolerant relatives of modern wheat | Functional and Integrative Genomics | 2009 | 130 |
| 49 | A novel blast resistance gene, Pi54rh cloned from wild species of rice, Oryza rhizomatis confers broad spectrum resistance to Magnaporthe oryzae | Functional and Integrative Genomics | 2012 | 130 |
| 50 | Novel and conserved heat-responsive microRNAs in wheat (Triticum aestivum L.) | Functional and Integrative Genomics | 2015 | 121 |
