# | Title | Journal | Year | Citations |
---|
1 | Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences | F1000Research | 2015 | 2,612 |
2 | Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences | F1000Research | 2015 | 1,848 |
3 | FastQ Screen: A tool for multi-genome mapping and quality control | F1000Research | 2018 | 905 |
4 | FastQ Screen: A tool for multi-genome mapping and quality control | F1000Research | 2018 | 865 |
5 | A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor | F1000Research | 2016 | 822 |
6 | Leishmaniasis: a review | F1000Research | 2017 | 699 |
7 | Bioconductor Workflow for Microbiome Data Analysis: from raw reads to community analyses | F1000Research | 2016 | 664 |
8 | A step-by-step workflow for low-level analysis of single-cell RNA-seq data | F1000Research | 2016 | 654 |
9 | Sustainable data analysis with Snakemake | F1000Research | 2021 | 642 |
10 | Epidemiology of mental health problems in COVID-19: a review | F1000Research | 2020 | 633 |
11 | Current understanding of Alzheimer’s disease diagnosis and treatment | F1000Research | 2018 | 619 |
12 | BlobTools: Interrogation of genome assemblies | F1000Research | 0 | 600 |
13 | GFF Utilities: GffRead and GffCompare | F1000Research | 2020 | 579 |
14 | Plant adaptation to drought stress | F1000Research | 2016 | 538 |
15 | From reads to genes to pathways: differential expression analysis of RNA-Seq experiments using Rsubread and the edgeR quasi-likelihood pipeline | F1000Research | 2016 | 497 |
16 | HiCUP: pipeline for mapping and processing Hi-C data | F1000Research | 2015 | 485 |
17 | GFF Utilities: GffRead and GffCompare | F1000Research | 2020 | 469 |
18 | Bioconductor workflow for microbiome data analysis: from raw reads to community analyses | F1000Research | 2016 | 466 |
19 | taxize: taxonomic search and retrieval in R | F1000Research | 2013 | 407 |
20 | From reads to genes to pathways: differential expression analysis of RNA-Seq experiments using Rsubread and the edgeR quasi-likelihood pipeline | F1000Research | 2016 | 399 |
21 | CoNet app: inference of biological association networks using Cytoscape | F1000Research | 2016 | 398 |
22 | RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR | F1000Research | 2016 | 394 |
23 | Thousands of exon skipping events differentiate among splicing patterns in sixteen human tissues | F1000Research | 2013 | 372 |
24 | RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR | F1000Research | 2016 | 368 |
25 | Prediction of the SARS-CoV-2 (2019-nCoV) 3C-like protease (3CLpro) structure: virtual screening reveals velpatasvir, ledipasvir, and other drug repurposing candidates | F1000Research | 2020 | 368 |
26 | Comprehensive comparison of Pacific Biosciences and Oxford Nanopore Technologies and their applications to transcriptome analysis | F1000Research | 2017 | 366 |
27 | The khmer software package: enabling efficient nucleotide sequence analysis | F1000Research | 2015 | 362 |
28 | Recent advances in (therapeutic protein) drug development | F1000Research | 2017 | 348 |
29 | gprofiler2 -- an R package for gene list functional enrichment analysis and namespace conversion toolset g:Profiler | F1000Research | 2020 | 331 |
30 | CoNet app: inference of biological association networks using Cytoscape | F1000Research | 2016 | 331 |
31 | CyTOF workflow: Differential discovery in high-throughput high-dimensional cytometry datasets | F1000Research | 2017 | 312 |
32 | RNA-Seq workflow: gene-level exploratory analysis and differential expression | F1000Research | 2015 | 304 |
33 | FreeSASA: An open source C library for solvent accessible surface area calculations | F1000Research | 2016 | 294 |
34 | Thousands of exon skipping events differentiate among splicing patterns in sixteen human tissues | F1000Research | 2013 | 293 |
35 | The academic, economic and societal impacts of Open Access: an evidence-based review | F1000Research | 2016 | 284 |
36 | Members of the genus Burkholderia: good and bad guys | F1000Research | 2016 | 280 |
37 | Dietary assessment methods in epidemiological research: current state of the art and future prospects | F1000Research | 2017 | 274 |
38 | MinION Analysis and Reference Consortium: Phase 1 data release and analysis | F1000Research | 2015 | 270 |
39 | Therapeutic strategies in an outbreak scenario to treat the novel coronavirus originating in Wuhan, China | F1000Research | 2020 | 251 |
40 | AutoAnnotate: A Cytoscape app for summarizing networks with semantic annotations | F1000Research | 2016 | 249 |
41 | CyTOF workflow: differential discovery in high-throughput high-dimensional cytometry datasets | F1000Research | 2017 | 244 |
42 | mTOR as a central regulator of lifespan and aging | F1000Research | 2019 | 244 |
43 | Prediction of the SARS-CoV-2 (2019-nCoV) 3C-like protease (3CLpro) structure: virtual screening reveals velpatasvir, ledipasvir, and other drug repurposing candidates | F1000Research | 2020 | 242 |
44 | GeneMANIA: Fast gene network construction and function prediction for Cytoscape | F1000Research | 2014 | 242 |
45 | mTOR inhibitors in cancer therapy | F1000Research | 2016 | 228 |
46 | Tumour necrosis factor signalling in health and disease | F1000Research | 2019 | 228 |
47 | All disease begins in the (leaky) gut: role of zonulin-mediated gut permeability in the pathogenesis of some chronic inflammatory diseases | F1000Research | 2020 | 221 |
48 | taxize: taxonomic search and retrieval in R | F1000Research | 2013 | 219 |
49 | Noise-induced and age-related hearing loss: new perspectives and potential therapies | F1000Research | 2017 | 216 |
50 | Improving data transparency in clinical trials using blockchain smart contracts | F1000Research | 2016 | 215 |