| # | Title | Journal | Year | Citations |
|---|
| 1 | Matplotlib: A 2D Graphics Environment | Computing in Science and Engineering | 2007 | 21,475 |
| 2 | The NumPy Array: A Structure for Efficient Numerical Computation | Computing in Science and Engineering | 2011 | 7,797 |
| 3 | IPython: A System for Interactive Scientific Computing | Computing in Science and Engineering | 2007 | 2,952 |
| 4 | XSEDE: Accelerating Scientific Discovery | Computing in Science and Engineering | 2014 | 2,790 |
| 5 | Python for Scientific Computing | Computing in Science and Engineering | 2007 | 2,607 |
| 6 | Transport in Protein Crystals, Part I: Insights from Molecular Simulations | Computing in Science and Engineering | 2007 | 1,312 |
| 7 | On the Evaluation of Finite Hilbert Transforms | Computing in Science and Engineering | 2007 | 1,274 |
| 8 | An object-oriented scripting interface to a legacy electronic structure code | Computing in Science and Engineering | 2002 | 1,117 |
| 9 | OpenCL: A Parallel Programming Standard for Heterogeneous Computing Systems | Computing in Science and Engineering | 2010 | 959 |
| 10 | Python for Scientists and Engineers | Computing in Science and Engineering | 2011 | 771 |
| 11 | Cython: The Best of Both Worlds | Computing in Science and Engineering | 2011 | 745 |
| 12 | OpenSees: A Framework for Earthquake Engineering Simulation | Computing in Science and Engineering | 2011 | 735 |
| 13 | Being Sensitive to Uncertainty | Computing in Science and Engineering | 2007 | 617 |
| 14 | Mayavi: 3D Visualization of Scientific Data | Computing in Science and Engineering | 2011 | 512 |
| 15 | The End of Moore's Law: A New Beginning for Information Technology | Computing in Science and Engineering | 2017 | 481 |
| 16 | The architecture of the earth system modeling framework | Computing in Science and Engineering | 2004 | 358 |
| 17 | Provenance for Computational Tasks: A Survey | Computing in Science and Engineering | 2008 | 335 |
| 18 | Graph Twiddling in a MapReduce World | Computing in Science and Engineering | 2009 | 317 |
| 19 | FiPy: Partial Differential Equations with Python | Computing in Science and Engineering | 2009 | 298 |
| 20 | SETI@home-massively distributed computing for SETI | Computing in Science and Engineering | 2001 | 280 |
| 21 | Cloud-Based Software Platform for Big Data Analytics in Smart Grids | Computing in Science and Engineering | 2013 | 249 |
| 22 | A computational framework for simulating and analyzing human and animal movement | Computing in Science and Engineering | 2000 | 238 |
| 23 | OpenPNM: A Pore Network Modeling Package | Computing in Science and Engineering | 2016 | 235 |
| 24 | Seismic denoising with nonuniformly sampled curvelets | Computing in Science and Engineering | 2006 | 217 |
| 25 | HUBzero: A Platform for Dissemination and Collaboration in Computational Science and Engineering | Computing in Science and Engineering | 2010 | 214 |
| 26 | Zoltan data management services for parallel dynamic applications | Computing in Science and Engineering | 2002 | 199 |
| 27 | Guest Editors Introduction to the top 10 algorithms | Computing in Science and Engineering | 2000 | 197 |
| 28 | OOF: an image-based finite-element analysis of material microstructures | Computing in Science and Engineering | 2001 | 197 |
| 29 | OpenMM: A Hardware-Independent Framework for Molecular Simulations | Computing in Science and Engineering | 2010 | 195 |
| 30 | PaRSEC: Exploiting Heterogeneity to Enhance Scalability | Computing in Science and Engineering | 2013 | 192 |
| 31 | Reproducible Research in Computational Harmonic Analysis | Computing in Science and Engineering | 2009 | 189 |
| 32 | What Is the Blockchain? | Computing in Science and Engineering | 2017 | 178 |
| 33 | Automatic Lip-Contour Extraction and Mouth-Structure Segmentation in Images | Computing in Science and Engineering | 2011 | 174 |
| 34 | Graphical Processing Units for Quantum Chemistry | Computing in Science and Engineering | 2008 | 169 |
| 35 | The what, how, and why of wavelet shrinkage denoising | Computing in Science and Engineering | 2000 | 168 |
| 36 | Beyond Moore's Law: the interconnect era | Computing in Science and Engineering | 2003 | 167 |
| 37 | Modeling the global Internet | Computing in Science and Engineering | 1999 | 164 |
| 38 | nanoHUB.org: Advancing Education and Research in Nanotechnology | Computing in Science and Engineering | 2008 | 163 |
| 39 | Making scientific computations reproducible | Computing in Science and Engineering | 2000 | 160 |
| 40 | Python: An Ecosystem for Scientific Computing | Computing in Science and Engineering | 2011 | 158 |
| 41 | Stochastic Computational Fluid Mechanics | Computing in Science and Engineering | 2007 | 155 |
| 42 | An introduction to algebraic multigrid | Computing in Science and Engineering | 2006 | 154 |
| 43 | The Computational Materials Repository | Computing in Science and Engineering | 2012 | 153 |
| 44 | MRICloud: Delivering High-Throughput MRI Neuroinformatics as Cloud-Based Software as a Service | Computing in Science and Engineering | 2016 | 148 |
| 45 | SciDB: A Database Management System for Applications with Complex Analytics | Computing in Science and Engineering | 2013 | 137 |
| 46 | What's Next? [The end of Moore's law] | Computing in Science and Engineering | 2017 | 136 |
| 47 | The Evolution of Computing: AlphaGo | Computing in Science and Engineering | 2016 | 131 |
| 48 | The Legal Framework for Reproducible Scientific Research: Licensing and Copyright | Computing in Science and Engineering | 2009 | 126 |
| 49 | Defining and Measuring Success in Online Citizen Science: A Case Study of Zooniverse Projects | Computing in Science and Engineering | 2015 | 120 |
| 50 | The Metropolis Algorithm | Computing in Science and Engineering | 2000 | 111 |
