10.9(top 1%)
impact factor
3.5K(top 5%)
papers
336.1K(top 1%)
citations
247(top 1%)
h-index
11.1(top 1%)
impact factor
3.8K
all documents
377.7K
doc citations
399(top 1%)
g-index

Top Articles

#TitleJournalYearCitations
1Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platformsISME Journal20127,430
2An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaeaISME Journal20124,581
3Soil bacterial and fungal communities across a pH gradient in an arable soilISME Journal20103,154
4Exact sequence variants should replace operational taxonomic units in marker-gene data analysisISME Journal20172,357
5UniFrac: an effective distance metric for microbial community comparisonISME Journal20112,280
6Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic SeaISME Journal20112,219
7Using network analysis to explore co-occurrence patterns in soil microbial communitiesISME Journal20122,051
8Pyrosequencing enumerates and contrasts soil microbial diversityISME Journal20071,615
9Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradientsISME Journal20121,405
10Quantifying community assembly processes and identifying features that impose themISME Journal20131,354
11Dominant and diet-responsive groups of bacteria within the human colonic microbiotaISME Journal20111,352
12dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replicationISME Journal20171,309
13Stochastic and deterministic assembly processes in subsurface microbial communitiesISME Journal20121,203
14Rhizosphere microbiome assemblage is affected by plant developmentISME Journal20141,128
15Examining the global distribution of dominant archaeal populations in soilISME Journal20111,112
16Distinct soil microbial diversity under long-term organic and conventional farmingISME Journal20151,076
17Structural segregation of gut microbiota between colorectal cancer patients and healthy volunteersISME Journal20121,038
18Habitat degradation impacts black howler monkey (Alouatta pigra) gastrointestinal microbiomesISME Journal20131,031
19Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip dataISME Journal20101,025
20Evidence for a core gut microbiota in the zebrafishISME Journal2011990
21A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analysesISME Journal2009984
22Using the class 1 integron-integrase gene as a proxy for anthropogenic pollutionISME Journal2015974
23Plant host habitat and root exudates shape soil bacterial community structureISME Journal2008958
24454 Pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plantsISME Journal2012957
25Defining seasonal marine microbial community dynamicsISME Journal2012928
26Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genesISME Journal2015928
27Microbial contributions to climate change through carbon cycle feedbacksISME Journal2008888
28Stress tolerance in plants via habitat-adapted symbiosisISME Journal2008887
29Long-term ecological impacts of antibiotic administration on the human intestinal microbiotaISME Journal2007885
30Phylogenetic distribution of three pathways for propionate production within the human gut microbiotaISME Journal2014861
31Where less may be more: how the rare biosphere pulls ecosystems stringsISME Journal2017857
32Interactions between gut microbiota, host genetics and diet relevant to development of metabolic syndromes in miceISME Journal2010845
33Ruminococcus bromii is a keystone species for the degradation of resistant starch in the human colonISME Journal2012801
34Distinct and complex bacterial profiles in human periodontitis and health revealed by 16S pyrosequencingISME Journal2012799
35Exploring the bovine rumen bacterial community from birth to adulthoodISME Journal2013799
36The subgingival microbiome in health and periodontitis and its relationship with community biomass and inflammationISME Journal2013785
37Responses of soil bacterial and fungal communities to extreme desiccation and rewettingISME Journal2013762
38Geographic patterns of co-occurrence network topological features for soil microbiota at continental scale in eastern ChinaISME Journal2016758
39Towards the definition of a core of microorganisms involved in anaerobic digestion of sludgeISME Journal2009728
40Active and total microbial communities in forest soil are largely different and highly stratified during decompositionISME Journal2012725
41Relative roles of niche and neutral processes in structuring a soil microbial communityISME Journal2010718
42Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in rootsISME Journal2019716
43Toward defining the autoimmune microbiome for type 1 diabetesISME Journal2011709
44Modulation of gut microbiota during probiotic-mediated attenuation of metabolic syndrome in high fat diet-fed miceISME Journal2015703
45Implications of streamlining theory for microbial ecologyISME Journal2014664
46Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and usesISME Journal2013661
47Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of riceISME Journal2012635
48Taxonomical and functional microbial community selection in soybean rhizosphereISME Journal2014633
49Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host developmentISME Journal2016627
50New processes and players in the nitrogen cycle: the microbial ecology of anaerobic and archaeal ammonia oxidationISME Journal2007618