# | Title | Journal | Year | Citations |
---|
1 | MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space | Systematic Biology | 2012 | 20,458 |
2 | A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood | Systematic Biology | 2003 | 15,438 |
3 | New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0 | Systematic Biology | 2010 | 15,166 |
4 | Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7 | Systematic Biology | 2018 | 6,726 |
5 | A Rapid Bootstrap Algorithm for the RAxML Web Servers | Systematic Biology | 2008 | 6,439 |
6 | Improvement of Phylogenies after Removing Divergent and Ambiguously Aligned Blocks from Protein Sequence Alignments | Systematic Biology | 2007 | 4,438 |
7 | An Empirical Test of Bootstrapping as a Method for Assessing Confidence in Phylogenetic Analysis | Systematic Biology | 1993 | 3,595 |
8 | Model Selection and Model Averaging in Phylogenetics: Advantages of Akaike Information Criterion and Bayesian Approaches Over Likelihood Ratio Tests | Systematic Biology | 2004 | 3,500 |
9 | Species Concepts and Species Delimitation | Systematic Biology | 2007 | 3,046 |
10 | Gene Trees in Species Trees | Systematic Biology | 1997 | 2,507 |
11 | A Likelihood Approach to Estimating Phylogeny from Discrete Morphological Character Data | Systematic Biology | 2001 | 2,448 |
12 | Approximate Likelihood-Ratio Test for Branches: A Fast, Accurate, and Powerful Alternative | Systematic Biology | 2006 | 2,426 |
13 | An Approximately Unbiased Test of Phylogenetic Tree Selection | Systematic Biology | 2002 | 2,400 |
14 | An Empirical Test of Bootstrapping as a Method for Assessing Confidence in Phylogenetic Analysis | Systematic Biology | 1993 | 2,316 |
15 | Gaps as Characters in Sequence-Based Phylogenetic Analyses | Systematic Biology | 2000 | 2,312 |
16 | Sequence-Based Species Delimitation for the DNA Taxonomy of Undescribed Insects | Systematic Biology | 2006 | 2,257 |
17 | Procedures for the Analysis of Comparative Data Using Phylogenetically Independent Contrasts | Systematic Biology | 1992 | 2,023 |
18 | Maximum Likelihood Inference of Geographic Range Evolution by Dispersal, Local Extinction, and Cladogenesis | Systematic Biology | 2008 | 1,871 |
19 | Toward Defining the Course of Evolution: Minimum Change for a Specific Tree Topology | Systematic Biology | 1971 | 1,741 |
20 | Bayesian Phylogenetic Analysis of Combined Data | Systematic Biology | 2004 | 1,636 |
21 | Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices | Systematic Biology | 2016 | 1,453 |
22 | Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks | Systematic Biology | 2012 | 1,438 |
23 | Dispersal-Vicariance Analysis: A New Approach to the Quantification of Historical Biogeography | Systematic Biology | 1997 | 1,434 |
24 | Delimiting Species Using Single-Locus Data and the Generalized Mixed Yule Coalescent Approach: A Revised Method and Evaluation on Simulated Data Sets | Systematic Biology | 2013 | 1,210 |
25 | DNA Barcoding and Taxonomy in Diptera: A Tale of High Intraspecific Variability and Low Identification Success | Systematic Biology | 2006 | 1,170 |
26 | Phylogenetic Analysis of Covariance by Computer Simulation | Systematic Biology | 1993 | 1,149 |
27 | Bayesian Estimation of Ancestral Character States on Phylogenies | Systematic Biology | 2004 | 1,113 |
28 | Likelihood-Based Tests of Topologies in Phylogenetics | Systematic Biology | 2000 | 1,032 |
29 | Constructing a Significance Test for Incongruence | Systematic Biology | 1995 | 1,030 |
30 | The Promise of DNA Barcoding for Taxonomy | Systematic Biology | 2005 | 988 |
31 | Model Selection in Historical Biogeography Reveals that Founder-Event Speciation Is a Crucial Process in Island Clades | Systematic Biology | 2014 | 987 |
32 | Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales | Systematic Biology | 2012 | 983 |
33 | Inferring Phylogeny Despite Incomplete Lineage Sorting | Systematic Biology | 2006 | 955 |
34 | Cases in which Parsimony or Compatibility Methods will be Positively Misleading | Systematic Biology | 1978 | 942 |
35 | Estimating a Binary Character's Effect on Speciation and Extinction | Systematic Biology | 2007 | 933 |
36 | The Maximum Likelihood Approach to Reconstructing Ancestral Character States of Discrete Characters on Phylogenies | Systematic Biology | 1999 | 924 |
37 | Quantitative Phyletics and the Evolution of Anurans | Systematic Biology | 1969 | 913 |
38 | Survey of Branch Support Methods Demonstrates Accuracy, Power, and Robustness of Fast Likelihood-based Approximation Schemes | Systematic Biology | 2011 | 912 |
39 | Inconsistency of Phylogenetic Estimates from Concatenated Data under Coalescence | Systematic Biology | 2007 | 907 |
40 | Divergence Time and Evolutionary Rate Estimation with Multilocus Data | Systematic Biology | 2002 | 895 |
41 | Partitioning and Combining Data in Phylogenetic Analysis | Systematic Biology | 1993 | 870 |
42 | Improving Marginal Likelihood Estimation for Bayesian Phylogenetic Model Selection | Systematic Biology | 2011 | 850 |
43 | Strategies to Protect Biological Diversity and the Evolutionary Processes That Sustain It | Systematic Biology | 2002 | 835 |
44 | Increased Taxon Sampling Greatly Reduces Phylogenetic Error | Systematic Biology | 2002 | 834 |
45 | Evolutionary Rates Analysis of Leguminosae Implicates a Rapid Diversification of Lineages during the Tertiary | Systematic Biology | 2005 | 813 |
46 | Frequentist Properties of Bayesian Posterior Probabilities of Phylogenetic Trees Under Simple and Complex Substitution Models | Systematic Biology | 2004 | 808 |
47 | Southern Hemisphere Biogeography Inferred by Event-Based Models: Plant versus Animal Patterns | Systematic Biology | 2004 | 796 |
48 | Stochastic Mapping of Morphological Characters | Systematic Biology | 2003 | 793 |
49 | Accounting for Calibration Uncertainty in Phylogenetic Estimation of Evolutionary Divergence Times | Systematic Biology | 2009 | 789 |
50 | A Linear-Time Algorithm for Gaussian and Non-Gaussian Trait Evolution Models | Systematic Biology | 2014 | 782 |