# | Title | Journal | Year | Citations |
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1 | Stable Isotope Labeling by Amino Acids in Cell Culture, SILAC, as a Simple and Accurate Approach to Expression Proteomics | Molecular and Cellular Proteomics | 2002 | 4,931 |
2 | Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ | Molecular and Cellular Proteomics | 2014 | 4,178 |
3 | Multiplexed Protein Quantitation in Saccharomyces cerevisiae Using Amine-reactive Isobaric Tagging Reagents | Molecular and Cellular Proteomics | 2004 | 3,873 |
4 | The Human Plasma Proteome | Molecular and Cellular Proteomics | 2002 | 3,776 |
5 | Analysis of the Human Tissue-specific Expression by Genome-wide Integration of Transcriptomics and Antibody-based Proteomics | Molecular and Cellular Proteomics | 2014 | 2,819 |
6 | Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis | Molecular and Cellular Proteomics | 2012 | 2,285 |
7 | Exponentially Modified Protein Abundance Index (emPAI) for Estimation of Absolute Protein Amount in Proteomics by the Number of Sequenced Peptides per Protein | Molecular and Cellular Proteomics | 2005 | 1,817 |
8 | Parts per Million Mass Accuracy on an Orbitrap Mass Spectrometer via Lock Mass Injection into a C-trap | Molecular and Cellular Proteomics | 2005 | 1,395 |
9 | Highly Selective Enrichment of Phosphorylated Peptides from Peptide Mixtures Using Titanium Dioxide Microcolumns | Molecular and Cellular Proteomics | 2005 | 1,356 |
10 | Absolute Quantification of Proteins by LCMSE | Molecular and Cellular Proteomics | 2006 | 1,349 |
11 | A Human Protein Atlas for Normal and Cancer Tissues Based on Antibody Proteomics | Molecular and Cellular Proteomics | 2005 | 1,226 |
12 | The Paragon Algorithm, a Next Generation Search Engine That Uses Sequence Temperature Values and Feature Probabilities to Identify Peptides from Tandem Mass Spectra | Molecular and Cellular Proteomics | 2007 | 1,205 |
13 | Quantitative Mass Spectrometric Multiple Reaction Monitoring Assays for Major Plasma Proteins | Molecular and Cellular Proteomics | 2006 | 1,140 |
14 | Comparison of Label-free Methods for Quantifying Human Proteins by Shotgun Proteomics | Molecular and Cellular Proteomics | 2005 | 1,063 |
15 | Parallel Reaction Monitoring for High Resolution and High Mass Accuracy Quantitative, Targeted Proteomics | Molecular and Cellular Proteomics | 2012 | 1,023 |
16 | Phosphate-binding Tag, a New Tool to Visualize Phosphorylated Proteins | Molecular and Cellular Proteomics | 2006 | 997 |
17 | Trypsin Cleaves Exclusively C-terminal to Arginine and Lysine Residues | Molecular and Cellular Proteomics | 2004 | 957 |
18 | The Matrisome: In Silico Definition and In Vivo Characterization by Proteomics of Normal and Tumor Extracellular Matrices | Molecular and Cellular Proteomics | 2012 | 920 |
19 | Interpretation of Shotgun Proteomic Data | Molecular and Cellular Proteomics | 2005 | 904 |
20 | Extending the Limits of Quantitative Proteome Profiling with Data-Independent Acquisition and Application to Acetaminophen-Treated Three-Dimensional Liver Microtissues | Molecular and Cellular Proteomics | 2015 | 873 |
21 | PEAKS DB: De Novo Sequencing Assisted Database Search for Sensitive and Accurate Peptide Identification | Molecular and Cellular Proteomics | 2012 | 866 |
22 | Discordant Protein and mRNA Expression in Lung Adenocarcinomas | Molecular and Cellular Proteomics | 2002 | 813 |
23 | The Human Plasma Proteome | Molecular and Cellular Proteomics | 2004 | 801 |
24 | A Proteome-wide, Quantitative Survey of In Vivo Ubiquitylation Sites Reveals Widespread Regulatory Roles | Molecular and Cellular Proteomics | 2011 | 754 |
25 | Characterization of the Low Molecular Weight Human Serum Proteome | Molecular and Cellular Proteomics | 2003 | 752 |
26 | Quantitative Phosphoproteomics Applied to the Yeast Pheromone Signaling Pathway | Molecular and Cellular Proteomics | 2005 | 708 |
27 | Toward a Human Blood Serum Proteome | Molecular and Cellular Proteomics | 2002 | 705 |
28 | Mass Spectrometry-based Proteomics Using Q Exactive, a High-performance Benchtop Quadrupole Orbitrap Mass Spectrometer | Molecular and Cellular Proteomics | 2011 | 701 |
29 | Comparative Proteomic Analysis of Eleven Common Cell Lines Reveals Ubiquitous but Varying Expression of Most Proteins | Molecular and Cellular Proteomics | 2012 | 701 |
30 | Toward a Comprehensive Atlas of the Physical Interactome of Saccharomyces cerevisiae | Molecular and Cellular Proteomics | 2007 | 692 |
31 | Integrated Genomic and Proteomic Analyses of Gene Expression in Mammalian Cells | Molecular and Cellular Proteomics | 2004 | 689 |
32 | Lysine Propionylation and Butyrylation Are Novel Post-translational Modifications in Histones | Molecular and Cellular Proteomics | 2007 | 639 |
33 | Quantitative, Multiplexed Assays for Low Abundance Proteins in Plasma by Targeted Mass Spectrometry and Stable Isotope Dilution | Molecular and Cellular Proteomics | 2007 | 619 |
34 | A Versatile Nanotrap for Biochemical and Functional Studies with Fluorescent Fusion Proteins | Molecular and Cellular Proteomics | 2008 | 616 |
35 | Quantitative Phosphoproteomics of Early Elicitor Signaling in Arabidopsis | Molecular and Cellular Proteomics | 2007 | 614 |
36 | Online Parallel Accumulation–Serial Fragmentation (PASEF) with a Novel Trapped Ion Mobility Mass Spectrometer | Molecular and Cellular Proteomics | 2018 | 602 |
37 | The First Identification of Lysine Malonylation Substrates and Its Regulatory Enzyme | Molecular and Cellular Proteomics | 2011 | 598 |
38 | Complementary Profiling of Gene Expression at the Transcriptome and Proteome Levels in Saccharomyces cerevisiae | Molecular and Cellular Proteomics | 2002 | 591 |
39 | GPS 2.0, a Tool to Predict Kinase-specific Phosphorylation Sites in Hierarchy | Molecular and Cellular Proteomics | 2008 | 587 |
40 | Protein Interactions | Molecular and Cellular Proteomics | 2002 | 570 |
41 | Mass Spectrometry as a Diagnostic and a Cancer Biomarker Discovery Tool | Molecular and Cellular Proteomics | 2004 | 568 |
42 | mzML—a Community Standard for Mass Spectrometry Data | Molecular and Cellular Proteomics | 2011 | 555 |
43 | A Genecentric Human Protein Atlas for Expression Profiles Based on Antibodies | Molecular and Cellular Proteomics | 2008 | 547 |
44 | A “Proteomic Ruler” for Protein Copy Number and Concentration Estimation without Spike-in Standards | Molecular and Cellular Proteomics | 2014 | 530 |
45 | Large-scale Analysis of in Vivo Phosphorylated Membrane Proteins by Immobilized Metal Ion Affinity Chromatography and Mass Spectrometry | Molecular and Cellular Proteomics | 2003 | 523 |
46 | Proteomics Analysis of A33 Immunoaffinity-purified Exosomes Released from the Human Colon Tumor Cell Line LIM1215 Reveals a Tissue-specific Protein Signature | Molecular and Cellular Proteomics | 2010 | 496 |
47 | Time-resolved Mass Spectrometry of Tyrosine Phosphorylation Sites in the Epidermal Growth Factor Receptor Signaling Network Reveals Dynamic Modules | Molecular and Cellular Proteomics | 2005 | 494 |
48 | Status of Large-scale Analysis of Post-translational Modifications by Mass Spectrometry | Molecular and Cellular Proteomics | 2013 | 491 |
49 | iProphet: Multi-level Integrative Analysis of Shotgun Proteomic Data Improves Peptide and Protein Identification Rates and Error Estimates | Molecular and Cellular Proteomics | 2011 | 490 |
50 | The One Hour Yeast Proteome | Molecular and Cellular Proteomics | 2014 | 489 |